View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_high_19 (Length: 273)
Name: NF5063_high_19
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 7356925 - 7356662
Alignment:
| Q |
1 |
tggtgaaggtgattatggaattgcttattatggtgttcttattgaagatactaaagttgctgtcaaaaacctcttgaataacaagtatgtgttttttcaa |
100 |
Q |
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| T |
7356925 |
tggtgaaggtgattatggaattgcttattatggtgttcttattgaagatactaaagttgctgtcaaaaacctcttgaataacaagtatgtgttttttcaa |
7356826 |
T |
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| Q |
101 |
attatgttttatttttgtgtagttgaatttgatatgaatttggtgttgactagttaatttgactctatcttgttttttatgtatagtttgtgttcaaagt |
200 |
Q |
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| T |
7356825 |
attatgttttatttttgtgtagttgaatttgatatgaatttggtgttgactagttaatttgactctatcttgttttctatgtaaagtttgtgttcaaagt |
7356726 |
T |
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| Q |
201 |
ttgcgttttgcttattcttggttaaagacaacaaagctgatgatgataaatatgatgatgatgt |
264 |
Q |
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| T |
7356725 |
ttgcgttttgcttattcttggttaaagacaacaaagatgatgatgataaatatgatgatgatgt |
7356662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 29791056 - 29790941
Alignment:
| Q |
1 |
tggtgaaggtgattatggaattgcttattatggtgttcttattgaagatactaaagttgctgtcaaaaacctcttgaataacaagtatgtgttttttcaa |
100 |
Q |
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| T |
29791056 |
tggtgaaggtggttatggaattgtttaccatggtgttcttacggatggtactaaagttgctgtcaaaaatctcttgaataacaagtatgtgtttttttaa |
29790957 |
T |
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| Q |
101 |
attatgttttattttt |
116 |
Q |
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| T |
29790956 |
attctgtttttttttt |
29790941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 29790922 - 29790873
Alignment:
| Q |
172 |
gttttttatgtatagtttgtgttcaaagtttgcgttttgcttattcttgg |
221 |
Q |
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||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |
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| T |
29790922 |
gttttctatgtatagtttgtgttgaaagtttgagttttgcttatgcttgg |
29790873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 11035864 - 11035953
Alignment:
| Q |
1 |
tggtgaaggtgattatggaattgcttattatggtgttcttattgaagatactaaagttgctgtcaaaaacctcttgaataacaagtatgt |
90 |
Q |
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||||||||||| ||||||||||| |||| |||||||||| |||| | ||| || ||||||| || || || ||||||||||||||||| |
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| T |
11035864 |
tggtgaaggtggttatggaattgtttatagtggtgttcttgttgatggtaccaagattgctgttaagaatcttttgaataacaagtatgt |
11035953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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