View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5063_high_2 (Length: 742)
Name: NF5063_high_2
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 19 - 732
Target Start/End: Original strand, 41875023 - 41875734
Alignment:
| Q |
19 |
caaatgacaatgggaaaatatgctgctgatatttcctccattaaagaagcacatgctagaattaaatcattgatccgaaaaactccagttctctcctcca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41875023 |
caaatgacaatgggaaaatatgctgctgatatttcctccattaaagaagcacatgctagaattaaatcattgatccgaaaaactccagttctctcctcca |
41875122 |
T |
|
| Q |
119 |
actctctgaatgacatatcaagaagacaactatattttaagtgtgaaaattttcaaaagaggtgagagatgaattttttatgaattcattaatatttgga |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41875123 |
actctctgaatgacatatcaagaagaaaactatattttaagtgtgaaaattttcaaaagaggtgagagatgaattttttatgaattcattaatatttgga |
41875222 |
T |
|
| Q |
219 |
tttttcctcactaatttttt-gagttatctggtttactctatctactgttatactcttgnnnnnnnnnnnnnnnnngaagaaatgactatataatatttt |
317 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41875223 |
tttttccccactaatttttttgagttatctggtttactctatctactgttatactcttgaaaaaaataataaa---gaagaaatgactatataatatttt |
41875319 |
T |
|
| Q |
318 |
cttctgtattctatgtcgttagtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttctaaaggtgttataac |
417 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41875320 |
cttctgtattctatgtcgttagcggagcttttaaatttagaggtgcctgcaatgctgttttctctctcacagatgaagatgcttctaaaggtgttataac |
41875419 |
T |
|
| Q |
418 |
acacagcaggtttgttttatgcaataattacataagttattttttcaaatctgattcagttaatttattctcttctaatgttgttctctgaaatcagtgg |
517 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41875420 |
acacagcaggtttgttttatgcaataaatacataagttattttttcaaatctgattcagttaatttattctcttctaatgttgttctctgaaatcagtgg |
41875519 |
T |
|
| Q |
518 |
aaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgtt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41875520 |
aaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgtt |
41875619 |
T |
|
| Q |
618 |
aagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttatac |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41875620 |
aagaggtatgatggtaaggttaacttttctgaggccaacataaggtcaagagatgaagttgcgtatatattacgacaagaaaccggtgctatatttatac |
41875719 |
T |
|
| Q |
718 |
cttcttctgatgatg |
732 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
41875720 |
cttcttctaatgatg |
41875734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 338 - 717
Target Start/End: Complemental strand, 40868891 - 40868504
Alignment:
| Q |
338 |
agtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttctaaaggtgttataacacacagcaggtttgttttat |
437 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||||||| | | |
|
|
| T |
40868891 |
agtggagcttttaaatttagaggtgcatgcaatgctgttttctctctcaatgatgaagatgcgtctaaaggggttataacacacagcaggtttgttatgt |
40868792 |
T |
|
| Q |
438 |
gcaata---attacataag----ttattttttcaaatctgattcagttaatttattct-cttctaatgttgttctctgaaatcagtggaaatcatgctgc |
529 |
Q |
| |
|
||| || ||| || || |||||||||||||||| ||| || | |||||| | ||||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
40868791 |
gcagtagtaattccagaaactgattattttttcaaatcttattttgtaattttattgttcttctgacgttgttctctgaaatcagtggaaaccatgctgc |
40868692 |
T |
|
| Q |
530 |
tgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaacttgagaatgttaagaggtatgat |
629 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||||||||| |||||| ||| ||||||| ||||| |||||| |||||||||| ||| |||||| | |
|
|
| T |
40868691 |
tgcattggctctggcagcaaaactacgggggatccctgcatacattgttattcctaaaaatgcgccaacatgtaaaattgagaatgtgaagcggtatggt |
40868592 |
T |
|
| Q |
630 |
ggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgctatatttatac |
717 |
Q |
| |
|
||| |||||| || ||||||||||| || || |||||||| ||| |||||||| | || | |||||||| |||||||| ||||||| |
|
|
| T |
40868591 |
ggtcaggttatctggtctgaggccaatatgcgatcaagagaggaaactgcgaataaagtgtggcaagaaactggtgctatttttatac |
40868504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 40869135 - 40868981
Alignment:
| Q |
30 |
gggaaaatatgctgctgatatttcctccattaaagaagcacatgctagaattaaatcattgatccgaaaaactccagttctctcctccaactctctgaat |
129 |
Q |
| |
|
||||| |||||||||||||||||| ||||| || ||||||||||| ||||| ||||||||||| | || || |||||||||||||||| |||||||||| |
|
|
| T |
40869135 |
gggaagatatgctgctgatatttcatccataaatgaagcacatgccagaataaaatcattgattcttaagaccccagttctctcctccacctctctgaat |
40869036 |
T |
|
| Q |
130 |
gacatatcaagaagacaactatattttaagtgtgaaaattttcaaaagaggtgag |
184 |
Q |
| |
|
| ||||||| |||| || || || ||||||||||||| || |||||| |||||| |
|
|
| T |
40869035 |
gccatatcaggaaggcagctttactttaagtgtgaaagcttccaaaaggggtgag |
40868981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 24818625 - 24818474
Alignment:
| Q |
33 |
aaaatatgctgctgatatttcctccattaaagaagcacatgctagaattaaatcattgatccgaaaaactccagttctctcctccaactctctgaatgac |
132 |
Q |
| |
|
||||||||| ||||| || ||||| | ||||||||| | | ||| |||||||||||| ||| | |||||||||||||||||||| |||||| ||||| |
|
|
| T |
24818625 |
aaaatatgccgctgacatatcctcagtaaaagaagcatacgataggattaaatcattggtccatagaactccagttctctcctccacctctctagatgac |
24818526 |
T |
|
| Q |
133 |
atatcaagaagacaactatattttaagtgtgaaaattttcaaaagaggtgag |
184 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
24818525 |
atatctggaagaaaactatattttaagtgtgaaaatttccaaaaaaggtgag |
24818474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 305 - 434
Target Start/End: Complemental strand, 24818392 - 24818262
Alignment:
| Q |
305 |
tatataatattttcttctgtattctatgtcg-ttagtggagcttttaaatttagaggtgcctgcaatgctgttttctctcttacagatgaagatgcttct |
403 |
Q |
| |
|
|||||||||||| ||| ||||||||||| | |||| ||||||||||||||||| ||||| ||||| |||||| ||||||| || |||||||| |||||| |
|
|
| T |
24818392 |
tatataatatttccttttgtattctatgaccattagcggagcttttaaatttaggggtgcatgcaacgctgttctctctctgaccgatgaagaggcttct |
24818293 |
T |
|
| Q |
404 |
aaaggtgttataacacacagcaggtttgttt |
434 |
Q |
| |
|
||||| || | ||||||||||||| ||||| |
|
|
| T |
24818292 |
aaaggagtaactacacacagcaggtgtgttt |
24818262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 509 - 724
Target Start/End: Complemental strand, 24818185 - 24817970
Alignment:
| Q |
509 |
aatcagtggaaatcatgctgctgcattggctttggcagcaaaactaaggggaatccctgcatacgttgttactccaaaaaatgtgccaatttgtaaactt |
608 |
Q |
| |
|
||||||||| || |||||||||||||| ||||||||||||| ||||||| |||||||||| |||| ||| |||| || ||| ||||||| || |
|
|
| T |
24818185 |
aatcagtgggaaccatgctgctgcattatctttggcagcaaagataagggggatccctgcatttattgtggttccgaaaagtgcaccatcttgtaaagtt |
24818086 |
T |
|
| Q |
609 |
gagaatgttaagaggtatgatggtaaggttaacttttctgaggccaacatacggtcaagagatgaagttgcgaatatattgcgacaagaaaccggtgcta |
708 |
Q |
| |
|
|| ||| |||||||||| ||||| || ||||| || |||||| || || | ||||||||| |||||| ||| | | || | |||||||| |||||| |
|
|
| T |
24818085 |
gaaaatattaagaggtacgatggaaacgttaatttggctgaggataatatgcagtcaagagaagaagttatgaacaaagtgaggcaagaaacaagtgcta |
24817986 |
T |
|
| Q |
709 |
tatttataccttcttc |
724 |
Q |
| |
|
| | |||||||||||| |
|
|
| T |
24817985 |
tctatataccttcttc |
24817970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University