View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_high_3 (Length: 540)
Name: NF5063_high_3
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 472; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Original strand, 52287963 - 52288471
Alignment:
| Q |
18 |
attttaacctttcaggtattttgagaattcttcctatgtttgatagaaactaatggtagttgctgaggttttatcatgaaaaaatgaagagtagtgctac |
117 |
Q |
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| T |
52287963 |
attttaacctttcaggtattttgagaattcttcctatgtttgatagaaactaatggtagttgctgaggttttatcatgaaaaaatgaagagtagtgctac |
52288062 |
T |
|
| Q |
118 |
tttttaaagggtagtgtgtactaatgtactatatttaaaaagtggtaaactagacttagtggtatcataattatattgctttttaatttcttatcttttc |
217 |
Q |
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| T |
52288063 |
tttttaaagggtagtgtgtactaatgtactatatttaaaaagtagtaaactagacttagtggtatcataattatattgctttttaatttcttatcttttc |
52288162 |
T |
|
| Q |
218 |
attattgaaggagtttgtctgcactgcaagcatcacaatgtaaaattaaaacctgattgattttcttgtggggagaagcactgacccacaggacataaac |
317 |
Q |
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| T |
52288163 |
attattgaaggagtttgtctgcactgcaagcatcacaatgtaaaattaaaacctgattgattttcttgtggggagaagcactgacccacaggacataaac |
52288262 |
T |
|
| Q |
318 |
tttgtggttgtttgttctcattggcattgctaattttacaatacttttgttaatggttcattagcaaaagttccatcaactagtttcattaaggaatttc |
417 |
Q |
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| T |
52288263 |
tttgtggttatttgttctcattggcattgctaattttacaatacttttgttaatggttcattagcaaaagttccatcaattagtttcattaaggaatttc |
52288362 |
T |
|
| Q |
418 |
tgatgcagagataatttgttataggtaaattttaataaattagtaggcatgttannnnnnnagggtttgaactttggatctcttggttagtacttcttca |
517 |
Q |
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| T |
52288363 |
tgatgcagagataatttgttataggtaaattttaataaataagtaggcatgttatttttttagggtttgaactttggatctcttggttagtacttcttca |
52288462 |
T |
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| Q |
518 |
gcgtctctc |
526 |
Q |
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| T |
52288463 |
gcgtctctc |
52288471 |
T |
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