View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5063_high_31 (Length: 239)

Name: NF5063_high_31
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5063_high_31
NF5063_high_31
[»] chr5 (5 HSPs)
chr5 (17-239)||(24564329-24564551)
chr5 (17-239)||(24605363-24605586)
chr5 (19-186)||(13938388-13938556)
chr5 (193-235)||(25582000-25582042)
chr5 (201-235)||(25791454-25791488)
[»] scaffold0174 (1 HSPs)
scaffold0174 (20-232)||(13006-13219)
[»] chr4 (10 HSPs)
chr4 (17-239)||(20872689-20872915)
chr4 (17-235)||(9886314-9886523)
chr4 (73-232)||(10057097-10057257)
chr4 (193-229)||(9611046-9611082)
chr4 (193-236)||(12230413-12230456)
chr4 (24-154)||(18321747-18321877)
chr4 (24-154)||(18453069-18453199)
chr4 (48-105)||(12249650-12249707)
chr4 (194-234)||(13234844-13234884)
chr4 (188-232)||(18555177-18555221)
[»] scaffold0074 (1 HSPs)
scaffold0074 (20-232)||(1307-1520)
[»] chr7 (6 HSPs)
chr7 (17-170)||(11091023-11091176)
chr7 (73-232)||(48812463-48812623)
chr7 (89-235)||(16379673-16379820)
chr7 (140-232)||(11310001-11310094)
chr7 (88-232)||(46580191-46580336)
chr7 (193-235)||(16068531-16068573)
[»] scaffold0381 (1 HSPs)
scaffold0381 (17-235)||(12021-12230)
[»] chr2 (13 HSPs)
chr2 (17-158)||(22497824-22497965)
chr2 (73-232)||(27472878-27473038)
chr2 (142-232)||(20915799-20915890)
chr2 (194-235)||(23908281-23908322)
chr2 (193-236)||(18985698-18985741)
chr2 (72-107)||(22497606-22497641)
chr2 (193-232)||(34858662-34858701)
chr2 (193-232)||(34873724-34873763)
chr2 (194-239)||(22497751-22497797)
chr2 (48-106)||(29638878-29638936)
chr2 (73-171)||(34858714-34858812)
chr2 (73-171)||(34873776-34873874)
chr2 (46-107)||(22497691-22497752)
[»] chr1 (3 HSPs)
chr1 (17-158)||(20761654-20761795)
chr1 (17-125)||(17451068-17451176)
chr1 (47-107)||(23034831-23034891)
[»] chr6 (3 HSPs)
chr6 (73-232)||(27851628-27851788)
chr6 (73-232)||(20733714-20733874)
chr6 (188-232)||(19545601-19545645)
[»] scaffold0395 (1 HSPs)
scaffold0395 (88-232)||(11337-11482)
[»] chr8 (4 HSPs)
chr8 (73-232)||(22237520-22237681)
chr8 (88-231)||(19807865-19808009)
chr8 (17-100)||(21493051-21493134)
chr8 (193-232)||(17861770-17861809)
[»] scaffold0153 (2 HSPs)
scaffold0153 (73-232)||(4722-4882)
scaffold0153 (73-232)||(11742-11902)
[»] chr3 (8 HSPs)
chr3 (73-232)||(52989328-52989488)
chr3 (120-232)||(3264577-3264690)
chr3 (193-236)||(27868744-27868787)
chr3 (193-235)||(22161330-22161372)
chr3 (193-234)||(10340490-10340531)
chr3 (194-235)||(21976705-21976746)
chr3 (194-235)||(21999136-21999177)
chr3 (140-232)||(36528208-36528301)
[»] scaffold0686 (1 HSPs)
scaffold0686 (73-232)||(861-1021)
[»] scaffold0032 (1 HSPs)
scaffold0032 (73-232)||(67719-67879)
[»] scaffold1405 (1 HSPs)
scaffold1405 (193-235)||(1305-1347)
[»] scaffold1043 (1 HSPs)
scaffold1043 (193-235)||(948-990)
[»] scaffold0207 (1 HSPs)
scaffold0207 (193-235)||(1409-1451)
[»] scaffold0170 (1 HSPs)
scaffold0170 (193-235)||(17742-17784)
[»] scaffold0290 (1 HSPs)
scaffold0290 (193-236)||(12318-12361)
[»] scaffold0118 (1 HSPs)
scaffold0118 (192-238)||(11553-11599)
[»] scaffold0010 (1 HSPs)
scaffold0010 (193-235)||(142736-142778)
[»] scaffold0364 (1 HSPs)
scaffold0364 (194-239)||(14164-14209)
[»] scaffold0094 (1 HSPs)
scaffold0094 (188-236)||(2953-3001)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 24564329 - 24564551
Alignment:
Q  17 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  24564329 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatatacaacttcgatgaagtcgctcaaa 24564428  T
Q  117 cctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaaagcacaaccttgctgatcccaactgacccctgtgtagtattttgat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  24564429 cctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaaagcacaaccttgctgatcccagctgatccctgtgtagtattttgat 24564528  T
Q  217 catatattgagttctagatgctt 239  Q
    |||||||||| ||||||||||||    
T  24564529 catatattgaattctagatgctt 24564551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 24605363 - 24605586
Alignment:
Q  17 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaa-gaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaa 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||    
T  24605363 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaaagaaactgaaagctaacaaccatatatacaacttcgatgaagtcgctcaa 24605462  T
Q  116 acctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaaagcacaaccttgctgatcccaactgacccctgtgtagtattttga 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  24605463 acctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaaagcacaaccttgctgatcccagctgatccctgtgtagtattttga 24605562  T
Q  216 tcatatattgagttctagatgctt 239  Q
    ||||||||||| ||||||||||||    
T  24605563 tcatatattgaattctagatgctt 24605586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 13938388 - 13938556
Alignment:
Q  19 tttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaag-aaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaac 117  Q
    ||||||||||| | ||||| ||||||| |||||||| || || |||||  ||||| ||||||||||  ||||||||||||||| |||||| ||| |||||    
T  13938388 tttaatcataactcaagttataaaaatataaatggattcaaatcaaaattaaact-aaagctaacattcatatctacaactttcatgaagacgcccaaac 13938486  T
Q  118 ctaattcgaaacagagaatggtagaaaagttgattttcctaggc-tagggaaaaagcacaaccttgctga 186  Q
    |||||||| |||||| | ||||||||| ||||||||||||| || | |||||| ||||| ||||||||||    
T  13938487 ctaattcggaacagaaagtggtagaaatgttgattttcctaagcttggggaaagagcacgaccttgctga 13938556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 25582042 - 25582000
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    ||||||||| ||||||||||| ||||||| |||||||||||||    
T  25582042 ctgacccctatgtagtattttcatcatatcttgagttctagat 25582000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 25791454 - 25791488
Alignment:
Q  201 tgtgtagtattttgatcatatattgagttctagat 235  Q
    ||||||||||||||||||||| |||||||||||||    
T  25791454 tgtgtagtattttgatcatatcttgagttctagat 25791488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 13006 - 13219
Alignment:
Q  20 ttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaacct 119  Q
    |||||| ||| ||||||| ||||||| ||||| | ||||||||||||| |||| ||||||||||||||||||||||||||| |||||| | | |||||||    
T  13006 ttaatcctaactaaagttataaaaatctaaatagggtccaaccaaaagcaactcaaagctaacaaccatatctacaactttcatgaagactcccaaacct 13105  T
Q  120 aattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-agcacaaccttgctgatcccaactgacccctgtgtagtattttgatca 218  Q
    |||||  |||||| |||   ||||||||||||||||||| ||| ||||||| || || ||  ||||||||||  ||||||||||||||||| ||||||||    
T  13106 aattcagaacagacaattccagaaaagttgattttcctatgctcgggaaaagaggacgactgtgctgatccctgctgacccctgtgtagtaatttgatca 13205  T
Q  219 tatattgagttcta 232  Q
    ||| ||| ||||||    
T  13206 tatcttgtgttcta 13219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 20872915 - 20872689
Alignment:
Q  17 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaa 116  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||  ||||||||| ||  |||||||| ||||||||| |||||| | | | ||    
T  20872915 attttaatcataactaaacttctaaaaatttaaatggagtccaaccaaaaccaactgaaagttagaaaccatatatacaacttttatgaagacaccctaa 20872816  T
Q  117 c---ctaattcgaaacagagaatggtagaaaagttgattttcctaggct-agggaaaaagcacaaccttgctgatcccaactgacccctgtgtagtattt 212  Q
        ||||||||  ||| | ||||| ||||||| ||||||||||| ||| ||||||||||||| |||||| |||||||  |||| |||| ||| ||||||    
T  20872815 taatctaattcgggacaaaaaatggcagaaaagatgattttcctaagcttagggaaaaagcacgaccttgttgatccctgctgaaccctttgtggtattt 20872716  T
Q  213 tgatcatatattgagttctagatgctt 239  Q
    ||||||||||||||| |||||||||||    
T  20872715 tgatcatatattgagatctagatgctt 20872689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 9886314 - 9886523
Alignment:
Q  17 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaa 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |||  | ||||  || ||||||||||| |||||  | | ||||    
T  9886314 attttaatcataagtcaagttctaaaaatttaaatggagtccaaccaaaataaaataaaaaatcacaattatgtctacaactttcatgaatactcccaaa 9886413  T
Q  117 cctaattcgaaacagagaatggtagaaaagttgattttcct-aggctagggaaaaagcacaaccttgctgatcccaactgacccctgtgtagtattttga 215  Q
    ||||||||  || ||| | |||||||||||||||||||||| ||  | |||||||||||||||||||           |||||| |||||||||||||||    
T  9886414 cctaattcagaaaagaaagtggtagaaaagttgattttcctaagtttggggaaaaagcacaaccttg----------ttgacccttgtgtagtattttga 9886503  T
Q  216 tcatatattgagttctagat 235  Q
    |||||| |||| ||||||||    
T  9886504 tcatatcttgatttctagat 9886523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 10057097 - 10057257
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   |||||||||||||| ||||| | | ||||||||||||  |||||| |||   ||||||||||||||||||| ||| ||||||| |    
T  10057097 gaaagctaacaaaattatctacaactttggtgaagactcccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcgggaaaaga 10057196  T
Q  172 gcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    | || ||  ||||||||||  ||||||||||||||||| ||||||||||| ||||||||||    
T  10057197 ggacgactgtgctgatccctgctgacccctgtgtagtaatttgatcatatcttgagttcta 10057257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 9611046 - 9611082
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagtt 229  Q
    |||||||||||||||||||||||||||||||| ||||    
T  9611046 ctgacccctgtgtagtattttgatcatatattaagtt 9611082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 12230413 - 12230456
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagatg 236  Q
    ||||||| ||||||||||||||| ||||| ||||||||||||||    
T  12230413 ctgacccatgtgtagtattttgaacatatcttgagttctagatg 12230456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 18321877 - 18321747
Alignment:
Q  24 tcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaatt 123  Q
    |||||||| |||||||| |  | |||||| | || ||| ||||| || |||||||||||| |||||||||||| ||| |||||| | |  ||| | ||||    
T  18321877 tcataagtcaagttctagatgtctaaatgcactcaaactaaaagcaaatgaaagctaacatccatatctacaattttcatgaagacacctaaatccaatt 18321778  T
Q  124 cgaaacagagaatggtagaaaagttgatttt 154  Q
    || |||||| | |||| ||||||||| ||||    
T  18321777 cggaacagaaagtggtggaaaagttggtttt 18321747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 18453069 - 18453199
Alignment:
Q  24 tcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaatt 123  Q
    |||||||| |||||||| |  | |||||| | || ||| ||||| || |||||||||||| |||||||||||| ||| |||||| | |  ||| | ||||    
T  18453069 tcataagtcaagttctagatgtctaaatgcactcaaactaaaagcaaatgaaagctaacatccatatctacaattttcatgaagacacctaaatccaatt 18453168  T
Q  124 cgaaacagagaatggtagaaaagttgatttt 154  Q
    || |||||| | |||| ||||||||| ||||    
T  18453169 cggaacagaaagtggtggaaaagttggtttt 18453199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 12249707 - 12249650
Alignment:
Q  48 aaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatga 105  Q
    |||||||||| ||| ||| | || |||||||||||| |||||||||||||||| ||||    
T  12249707 aaatggagtcaaacaaaaggcaaatgaaagctaacatccatatctacaactttcatga 12249650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 13234844 - 13234884
Alignment:
Q  194 tgacccctgtgtagtattttgatcatatattgagttctaga 234  Q
    ||||| |||||||||||||||||||||| | ||||||||||    
T  13234844 tgacctctgtgtagtattttgatcatatctagagttctaga 13234884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 18555221 - 18555177
Alignment:
Q  188 cccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    |||| ||||||  ||||||||||||||||||||| ||||||||||    
T  18555221 cccagctgacctatgtgtagtattttgatcatatcttgagttcta 18555177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 1307 - 1520
Alignment:
Q  20 ttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaacct 119  Q
    |||||| ||| ||||||| ||||||| ||||| | ||||||||||||| |||| ||||||||||||||||||||||||||| |||||| | | |||||||    
T  1307 ttaatcctaactaaagttataaaaatctaaatagggtccaaccaaaagcaactcaaagctaacaaccatatctacaactttcatgaagactcccaaacct 1406  T
Q  120 aattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-agcacaaccttgctgatcccaactgacccctgtgtagtattttgatca 218  Q
    |||||  |||||| |||   ||||||||||||||||||| ||| | ||||| || || ||  ||||||||||  ||||| ||||||||||| ||||||||    
T  1407 aattcagaacagaaaattccagaaaagttgattttcctatgctcgcgaaaagaggacgactgtgctgatccctgctgactcctgtgtagtaatttgatca 1506  T
Q  219 tatattgagttcta 232  Q
    ||| ||||||||||    
T  1507 tatcttgagttcta 1520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 11091023 - 11091176
Alignment:
Q  17 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaa 116  Q
    ||||||||| ||| ||||||||||||||| ||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |||||| | | ||||    
T  11091023 attttaatcctaactaaagttctaaaaatataaatggggtccaaccaaaagcaactcaaagctaacaaccatatctacaactttcatgaagactcccaaa 11091122  T
Q  117 cctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa 170  Q
    | ||||||  |||||| |||   ||||||||||||||||||| ||| |||||||    
T  11091123 cttaattcagaacagaaaattccagaaaagttgattttcctatgctcgggaaaa 11091176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 48812463 - 48812623
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   ||| ||||||||| |||||| |   ||||||||||||| |||||| |||   ||||||||||||||||||| ||| ||||||| |    
T  48812463 gaaagctaacaaaattatatacaactttcatgaagacttccaaacctaattcggaacagaaaattccagaaaagttgattttcctatgctcgggaaaaga 48812562  T
Q  172 gcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    | || ||  ||||||||||   |||||| ||||||||| ||||||||||| ||||||||||    
T  48812563 ggacgactgtgctgatccctgttgacccttgtgtagtaatttgatcatatcttgagttcta 48812623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 16379820 - 16379673
Alignment:
Q  89 atctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-agcacaaccttgctgat 187  Q
    |||||| ||||| |||||| | | |||| ||||||| ||||| | | ||| |||||| || ||||||||| | | ||| ||| || || ||| ||||||     
T  16379820 atctacgactttcatgaagactcccaaatctaattcaaaacataaagtggcagaaaaattcattttcctatgtttggggaaagaggacgaccctgctgac 16379721  T
Q  188 cccaactgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    |||   |||||||||||||||||||| |||||||||||||||||||||    
T  16379720 ccctgatgacccctgtgtagtattttcatcatatattgagttctagat 16379673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 11310001 - 11310094
Alignment:
Q  140 agaaaagttgattttcctaggctagggaaaa-agcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    ||||||||||||||||||| ||| ||| ||| ||||| ||| || ||||| | | ||||| || ||||||||||||||||||| ||||||||||    
T  11310001 agaaaagttgattttcctaagctcggggaaagagcacgaccgtgttgatctctattgacctctctgtagtattttgatcatatcttgagttcta 11310094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 232
Target Start/End: Complemental strand, 46580336 - 46580191
Alignment:
Q  88 tatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-agcacaaccttgctga 186  Q
    ||||||||||||| |||||| | | |||||| |||||  || ||| |||    ||||| |||||||||||| ||| ||||||| || || ||  ||||||    
T  46580336 tatctacaactttcatgaagactcccaaacccaattcagaatagaaaattcaggaaaatttgattttcctatgctcgggaaaagaggacgactgtgctga 46580237  T
Q  187 tcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    ||||  ||||||||||| ||||| ||||||||||| ||||||||||    
T  46580236 tccctgctgacccctgtatagtaatttgatcatatcttgagttcta 46580191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 16068573 - 16068531
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    ||||||| ||||||||||||||||||||| ||| |||||||||    
T  16068573 ctgacccatgtgtagtattttgatcatatcttgggttctagat 16068531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 12230 - 12021
Alignment:
Q  17 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaa 116  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |||  | ||||  || ||||||||||| |||||  | | ||||    
T  12230 attttaatcataagtcaagttctaaaaatttaaatggagtccaaccaaaataaaataaaaaatcacaattatgtctacaactttcatgaatactcccaaa 12131  T
Q  117 cctaattcgaaacagagaatggtagaaaagttgattttcct-aggctagggaaaaagcacaaccttgctgatcccaactgacccctgtgtagtattttga 215  Q
    ||||||||  || ||| | |||||||||||||||||||||| ||  | |||||||||||||||||||           |||||| |||||||||||||||    
T  12130 cctaattcagaaaagaaagtggtagaaaagttgattttcctaagtttggggaaaaagcacaaccttg----------ttgacccttgtgtagtattttga 12041  T
Q  216 tcatatattgagttctagat 235  Q
    |||||| |||| ||||||||    
T  12040 tcatatcttgatttctagat 12021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 22497965 - 22497824
Alignment:
Q  17 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaa 116  Q
    ||||||||||||| | ||||||||||||| |||||||||||||||||||| ||| ||||| |||||| |||||| ||||||||| |||||| | | || |    
T  22497965 attttaatcataaatcaagttctaaaaatctaaatggagtccaaccaaaataaaatgaaatctaacatccatatttacaactttcatgaagactcccaga 22497866  T
Q  117 cctaattcgaaacagagaatggtagaaaagttgattttccta 158  Q
    ||||||||| |||| | | ||||||||||||||  |||||||    
T  22497865 cctaattcggaacaaaaagtggtagaaaagttgggtttccta 22497824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 27472878 - 27473038
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   ||||||||||||| |||||| | | ||||||||||||  |||||| |||   ||||||||||||||||||| ||| ||||||| |    
T  27472878 gaaagctaacaaaattatctacaactttaatgaagactcccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcgggaaaaga 27472977  T
Q  172 gcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    | || ||  |||||| |||  ||||||||||||||||| ||||||||||| | ||||||||    
T  27472978 ggacgactgtgctgacccctgctgacccctgtgtagtaatttgatcatatctagagttcta 27473038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 20915799 - 20915890
Alignment:
Q  142 aaaagttgattttcctaggctagggaaaa-agcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    ||||||||||||||||| ||| ||||||| || || ||  ||||||||||  ||||||||| ||||||| ||||||||||| ||||||||||    
T  20915799 aaaagttgattttcctatgctcgggaaaagaggacgactgtgctgatccctgctgacccctatgtagtaatttgatcatatcttgagttcta 20915890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 23908281 - 23908322
Alignment:
Q  194 tgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    |||||| ||||||||||||||||||||| |||||||||||||    
T  23908281 tgacccatgtgtagtattttgatcatatcttgagttctagat 23908322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 18985741 - 18985698
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagatg 236  Q
    |||||| |||||||||||||||||||||| |||| |||||||||    
T  18985741 ctgacctctgtgtagtattttgatcatatcttgatttctagatg 18985698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 22497641 - 22497606
Alignment:
Q  72 tgaaagctaacaaccatatctacaactttgatgaag 107  Q
    ||||||||||||||||||||||||||||| ||||||    
T  22497641 tgaaagctaacaaccatatctacaactttcatgaag 22497606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 34858701 - 34858662
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  34858701 ctgacccctgtgtagtaatttgatcatatcttgagttcta 34858662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 34873763 - 34873724
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  34873763 ctgacccctgtgtagtaatttgatcatatcttgagttcta 34873724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 22497797 - 22497751
Alignment:
Q  194 tgacccctgtgta-gtattttgatcatatattgagttctagatgctt 239  Q
    ||||||||||||| ||||||||| ||||| |||||||||||||||||    
T  22497797 tgacccctgtgtaagtattttgaccatatcttgagttctagatgctt 22497751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 29638878 - 29638936
Alignment:
Q  48 aaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaa 106  Q
    |||||||||| ||||||||| || |||||| ||||| ||| |||||||||||| |||||    
T  29638878 aaatggagtcaaaccaaaagcaaatgaaagataacatccacatctacaactttcatgaa 29638936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 34858812 - 34858714
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaaa 171  Q
    ||||||||||||   ||||||||||||| |||||| |   ||||||||||||  |||||| |||   ||||||||||||||||||| ||| || |||||    
T  34858812 gaaagctaacaaaattatctacaactttcatgaagacttccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcggaaaaaa 34858714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 34873874 - 34873776
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaaa 171  Q
    ||||||||||||   ||||||||||||| |||||| |   ||||||||||||  |||||| |||   ||||||||||||||||||| ||| || |||||    
T  34873874 gaaagctaacaaaattatctacaactttcatgaagacttccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcggaaaaaa 34873776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 22497752 - 22497691
Alignment:
Q  46 ttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaag 107  Q
    |||||||||||||  ||||| || | ||||||||||||  ||||||||||||||| ||||||    
T  22497752 ttaaatggagtccctccaaaggatagtgaaagctaacattcatatctacaactttcatgaag 22497691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 20761654 - 20761795
Alignment:
Q  17 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaa 116  Q
    ||||||||||||| | |||||||||||||||||||||||| ||||||||  ||  |||| | ||| |  ||||||||| ||||| |||||| | || |||    
T  20761654 attttaatcataactcaagttctaaaaatttaaatggagttcaaccaaattaagatgaatgttaatattcatatctacgacttttatgaagacacttaaa 20761753  T
Q  117 cctaattcgaaacagagaatggtagaaaagttgattttccta 158  Q
    |||||||| ||||||| | |||||||||||||||||||||||    
T  20761754 cctaattcaaaacagaaagtggtagaaaagttgattttccta 20761795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 17451068 - 17451176
Alignment:
Q  17 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaagtcgctcaaa 116  Q
    |||||||| |||| | ||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||| |||| || ||| |||||| ||| ||||    
T  17451068 attttaataataactcaagttctaaaaatgtaaatggagtccaaccaaaagaaaatgaaatctaacatccatgtctataattttcatgaagacgcccaaa 17451167  T
Q  117 cctaattcg 125  Q
    |||||||||    
T  17451168 cctaattcg 17451176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 23034831 - 23034891
Alignment:
Q  47 taaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaactttgatgaag 107  Q
    |||||||||| || |||||   ||||||||||||||| |||||||||||| ||| ||||||    
T  23034831 taaatggagttcatccaaagacaactgaaagctaacatccatatctacaaatttcatgaag 23034891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 27851628 - 27851788
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   |||||| |||||| |||||| | | |||||||||||| ||||||| |||   ||||||||||||||||||| ||| ||||||| |    
T  27851628 gaaagctaacaaaattatctaaaactttcatgaagactcccaaacctaattcaaaacagaaaattccagaaaagttgattttcctatgctcgggaaaaga 27851727  T
Q  172 gcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    | || ||  ||||||||||  ||||||||||||||||| ||||||||||  ||||||||||    
T  27851728 ggacgactgtgctgatccctgctgacccctgtgtagtaatttgatcataacttgagttcta 27851788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 20733874 - 20733714
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   |||||| |||||| |||||  | | ||||||||||||  || ||| |||   |||||| |||||||||| | ||| ||||||| |    
T  20733874 gaaagctaacaaaattatctaaaactttcatgaatactcccaaacctaattcagaatagaaaattccagaaaaattgattttccaatgctcgggaaaaga 20733775  T
Q  172 gcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    | || ||  ||||||||||  ||||||| ||||||||| ||||||||||  ||||||||||    
T  20733774 ggacgactgtgctgatccctgctgacccatgtgtagtaatttgatcataacttgagttcta 20733714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 19545645 - 19545601
Alignment:
Q  188 cccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    |||| ||||||  ||||||||||||||||||||| ||||||||||    
T  19545645 cccagctgacctatgtgtagtattttgatcatatcttgagttcta 19545601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 232
Target Start/End: Original strand, 11337 - 11482
Alignment:
Q  88 tatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-agcacaaccttgctga 186  Q
    ||||||||||||| |||||| | | ||||||||||||  || ||| |||   ||||||||||||||||||| ||| ||||||| || || ||  ||||||    
T  11337 tatctacaactttcatgaagactcccaaacctaattcagaatagaaaattccagaaaagttgattttcctatgctcgggaaaagaggacgactgtgctga 11436  T
Q  187 tcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    ||||  ||||||||||||||||| ||||||||||| ||||||||||    
T  11437 tccctgctgacccctgtgtagtaatttgatcatatcttgagttcta 11482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 22237681 - 22237520
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   ||||||||||||| |||||| | | ||||||||||||  |||||| |||   ||||||||||||||||||| ||| ||||||| |    
T  22237681 gaaagctaacaaaattatctacaactttcatgaagactcccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcgggaaaaga 22237582  T
Q  172 gcacaaccttgctgatcccaactga-cccctgtgtagtattttgatcatatattgagttcta 232  Q
    | || ||  ||||||||||  |||| ||||||||||||| ||||||||||| ||||||||||    
T  22237581 ggacgactgtgctgatccctgctgaccccctgtgtagtaatttgatcatatcttgagttcta 22237520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 231
Target Start/End: Complemental strand, 19808009 - 19807865
Alignment:
Q  88 tatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-agcacaaccttgctga 186  Q
    ||||||||||||| |||||| | | |||| |||||||  |||||| |||   ||||||||||||||||||| ||| ||||||| || || ||  ||||||    
T  19808009 tatctacaactttcatgaagactcccaaatctaattcagaacagaaaattccagaaaagttgattttcctatgctcgggaaaagaggacgactgtgctga 19807910  T
Q  187 tcccaactgacccctgtgtagtattttgatcatatattgagttct 231  Q
    ||||  ||||||| ||||||||| ||||||||||| |||||||||    
T  19807909 tccctgctgacccttgtgtagtaatttgatcatatcttgagttct 19807865  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 21493134 - 21493051
Alignment:
Q  17 attttaatcataagtaaagttctaaaaatttaaatggagtccaaccaaaagaaactgaaagctaacaaccatatctacaacttt 100  Q
    ||||| ||||||| | |||||||| |||| |||||| |||||||||||  | || |||||||||||| |||||||| |||||||    
T  21493134 attttgatcataactcaagttctataaatctaaatgaagtccaaccaatggcaaatgaaagctaacatccatatcttcaacttt 21493051  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 17861809 - 17861770
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  17861809 ctgacccatgtgtagtattttgatcatatcttgagttcta 17861770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 4722 - 4882
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   ||||||||||||| |||||| | | ||||||||||||  |||||| |||   ||||||||||||||||||| ||| | ||||| |    
T  4722 gaaagctaacaaaattatctacaactttcatgaagactcccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcgtgaaaaga 4821  T
Q  172 gcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    | || ||  || |||||||  ||||||||||||||||| ||||||||||| ||||||||||    
T  4822 ggacgactgtgttgatccctgctgacccctgtgtagtaatttgatcatattttgagttcta 4882  T

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Target: scaffold0153; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 11742 - 11902
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   ||||||||||||| |||||| | | ||||||||||||  |||||| |||   ||||||||||||||||||| ||| | ||||| |    
T  11742 gaaagctaacaaaattatctacaactttcatgaagactcccaaacctaattcagaacagaaaattccagaaaagttgattttcctatgctcgtgaaaaga 11841  T
Q  172 gcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    | || ||  || |||||||  ||||||||||||||||| ||||||||||| ||||||||||    
T  11842 ggacgactgtgttgatccctgctgacccctgtgtagtaatttgatcatattttgagttcta 11902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 232
Target Start/End: Complemental strand, 52989488 - 52989328
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   ||||||||||||| |||||| | | ||||||||||||  |||||| |||   |||||| |||||||||||| ||| ||||||| |    
T  52989488 gaaagctaacaaaattatctacaactttcatgaagactcccaaacctaattcagaacagaaaattccagaaaaattgattttcctatgctcgggaaaaga 52989389  T
Q  172 gcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    | || ||  || |||||||  ||||||||||||||||| ||||||||||| ||||||||||    
T  52989388 ggacgactgtgttgatccctgctgacccctgtgtagtaatttgatcatatcttgagttcta 52989328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 3264690 - 3264577
Alignment:
Q  120 aattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-agcacaaccttgctgatcccaactgacccctgtgtagtattttgatca 218  Q
    ||||||||||||| |||   |||||||||| |||||||| ||| ||| ||| ||||| ||| || ||||||| ||||||| |||||||||||||||||||    
T  3264690 aattcgaaacagaaaattccagaaaagttggttttcctaagctcggggaaagagcacgaccgtgttgatccctactgacctctgtgtagtattttgatca 3264591  T
Q  219 tatattgagttcta 232  Q
    ||  ||||||||||    
T  3264590 tagcttgagttcta 3264577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 27868787 - 27868744
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagatg 236  Q
    |||||| |||||||||||||||||||||| ||||||||||||||    
T  27868787 ctgacctctgtgtagtattttgatcatatcttgagttctagatg 27868744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 22161330 - 22161372
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||    
T  22161330 ctgacccatgtgtagtattttgaccatatcttgagttctagat 22161372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 234
Target Start/End: Original strand, 10340490 - 10340531
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctaga 234  Q
    |||||||||||| |||||||||||||||| | ||||||||||    
T  10340490 ctgacccctgtgaagtattttgatcatatctagagttctaga 10340531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 21976705 - 21976746
Alignment:
Q  194 tgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  21976705 tgacccatgtgtagtattttgaccatatcttgagttctagat 21976746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 21999136 - 21999177
Alignment:
Q  194 tgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  21999136 tgacccatgtgtagtattttgaccatatcttgagttctagat 21999177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 36528208 - 36528301
Alignment:
Q  140 agaaaagttgattttcctaggctagggaaaa-agcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    |||||||||||||| |||| ||| ||| ||| |||||  || || | |||||  |||||| |||||||||||||||||||||  ||||||||||    
T  36528208 agaaaagttgatttacctaagctcggggaaagagcacggccgtgtttatccctgctgacctctgtgtagtattttgatcataacttgagttcta 36528301  T

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Target: scaffold0686 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 861 - 1021
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   ||||||||||||||||||||   |  |||||||||||  |||||||||    ||||||||||||||||||| ||| ||||||| |    
T  861 gaaagctaacaaaattatctacaactttgatgaagattcctaaacctaattcagaacagagaaatccagaaaagttgattttcctatgctcgggaaaaga 960  T
Q  172 gcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
      || ||  ||||||||||  ||||  ||| ||||||| ||||||||||| ||||||||||    
T  961 agacgactgtgctgatccctcctgattcctttgtagtaatttgatcatatcttgagttcta 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 67719 - 67879
Alignment:
Q  73 gaaagctaacaaccatatctacaactttgatgaagtcgctcaaacctaattcgaaacagagaatggtagaaaagttgattttcctaggctagggaaaa-a 171  Q
    ||||||||||||   ||||||||||||| |||||| | | |||| |||||||  |||||| |||   | |||||| |||||||||| ||| ||||||| |    
T  67719 gaaagctaacaaaattatctacaactttcatgaagactcccaaatctaattcagaacagaaaatttcataaaagtggattttcctatgctcgggaaaaga 67818  T
Q  172 gcacaaccttgctgatcccaactgacccctgtgtagtattttgatcatatattgagttcta 232  Q
    |  | ||  ||||||||||  ||||||||||||||||| |||||| |||| ||||||||||    
T  67819 gggcgactgtgctgatccctgctgacccctgtgtagtaatttgattatatcttgagttcta 67879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1405 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1405
Description:

Target: scaffold1405; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 1305 - 1347
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  1305 ctgacccctgtgtagtattttcatcatatattgagttctagat 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 990 - 948
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  990 ctgacccctgtgtagtattttgatcatatcttgagttctagat 948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 1451 - 1409
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    |||||||||||||| |||||| |||||||||||||||||||||    
T  1451 ctgacccctgtgtactattttcatcatatattgagttctagat 1409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 17742 - 17784
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  17742 ctgacccatgtgtagtattttgatcatatcttgagttctagat 17784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 193 - 236
Target Start/End: Complemental strand, 12361 - 12318
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagatg 236  Q
    |||||| |||||||||||||||||||||| |||| |||||||||    
T  12361 ctgacctctgtgtagtattttgatcatatcttgatttctagatg 12318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Original strand, 11553 - 11599
Alignment:
Q  192 actgacccctgtgtagtattttgatcatatattgagttctagatgct 238  Q
    |||||||  ||||||||| ||||||||||| ||||||||||||||||    
T  11553 actgacctatgtgtagtaatttgatcatatcttgagttctagatgct 11599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 142736 - 142778
Alignment:
Q  193 ctgacccctgtgtagtattttgatcatatattgagttctagat 235  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||    
T  142736 ctgacccatgtgtagtattttgatcatatcttgagttgtagat 142778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 14164 - 14209
Alignment:
Q  194 tgacccctgtgtagtattttgatcatatattgagttctagatgctt 239  Q
    |||||||||||||||||||||||||||| | ||||| |||| ||||    
T  14164 tgacccctgtgtagtattttgatcatatctagagttatagacgctt 14209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 3001 - 2953
Alignment:
Q  188 cccaactgacccctgtgtagtattttgatcatatattgagttctagatg 236  Q
    |||| ||||||  ||||||||||||||||||||| ||||||| ||||||    
T  3001 cccagctgacctatgtgtagtattttgatcatatcttgagttttagatg 2953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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