View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5063_high_36 (Length: 223)

Name: NF5063_high_36
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5063_high_36
NF5063_high_36
[»] chr8 (14 HSPs)
chr8 (1-201)||(6313800-6314000)
chr8 (10-177)||(5624399-5624566)
chr8 (1-182)||(5598509-5598690)
chr8 (1-182)||(5636585-5636766)
chr8 (1-182)||(13164229-13164410)
chr8 (8-182)||(32632522-32632696)
chr8 (1-181)||(5568533-5568713)
chr8 (1-177)||(14403107-14403283)
chr8 (1-182)||(5547373-5547554)
chr8 (93-182)||(5572439-5572528)
chr8 (1-85)||(5562302-5562386)
chr8 (20-84)||(5572753-5572817)
chr8 (23-84)||(12178863-12178924)
chr8 (23-84)||(12423291-12423352)
[»] scaffold0363 (1 HSPs)
scaffold0363 (1-177)||(15570-15746)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 6313800 - 6314000
Alignment:
Q  1 aagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6313800 aagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcgg 6313899  T
Q  101 cacaaatcaccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatatttcttcataggcatagtagcagcat 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6313900 cacaaatcagcgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatatttcttcataggcatagtagcagcat 6313999  T
Q  201 g 201  Q
    |    
T  6314000 g 6314000  T

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Target: chr8; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 177
Target Start/End: Complemental strand, 5624566 - 5624399
Alignment:
Q  10 agtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcggcacaaatca 109  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | | ||||||||||||||  || | | ||||||||||| ||    
T  5624566 agtggattgtttgattgctttcacaagttctgcccaaacttcatctcctttctcgatctttttgtctatgtaggtatggatatagtttcggcacaaagca 5624467  T
Q  110 ccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatattt 177  Q
     |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  5624466 gcgtaaagatggcttgtgaatccagcgcgagtgtcgtcgcctctaaagctgatgaaaacatcatattt 5624399  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 5598509 - 5598690
Alignment:
Q  1 aagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcgg 100  Q
    |||||| | |||||||| |||||||||||| || ||||||  ||||||||||||||||||||||||||| || |||||||||||||  || | |  | ||    
T  5598509 aagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctataatctatgtaggtattgatataggattgg 5598608  T
Q  101 cacaaatcaccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatatttcttca 182  Q
    || | | ||  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  5598609 catagagcagtgtaaagatggcttgtgaaaccagcgcgagtgtcatcgcctctaaagctgatgaaaacatcatattttttca 5598690  T

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Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 5636766 - 5636585
Alignment:
Q  1 aagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcgg 100  Q
    |||||| | |||||||| |||||||||||| || ||||||  ||||||||||||||||||||||||||| || |||||||||||||  || | |  | ||    
T  5636766 aagaaacagagtggattctttgattgctttaacaagttctgaccaaacttcatctcctttctcgatcctataatctatgtaggtattgatataggattgg 5636667  T
Q  101 cacaaatcaccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatatttcttca 182  Q
    || | | ||  |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  5636666 catagagcagtgtaaagatggcttgtgaaaccagcgcgagtgtcatcgcctctaaagctgatgaaaacatcatattttttca 5636585  T

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Target: chr8; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 13164410 - 13164229
Alignment:
Q  1 aagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcgg 100  Q
    |||||| | ||||||||  ||||||||||||   |||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||  |||||||||    
T  13164410 aagaaaaagagtggattcattgattgctttctgaagttctccccaaacttcatctcctttttcgatcctgtagtctatgtatgtatgaaagttgcttcgg 13164311  T
Q  101 cacaaatcaccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatatttcttca 182  Q
    |||||  || ||| ||||||||||||||| ||||| || ||||| ||||||| ||||||||| |||||||||||||| ||||    
T  13164310 cacaatgcagcgtgaagatggcttgtgaaaccagcccgtgtgtcgtcacctcgaaagctgataaaaacatcatattttttca 13164229  T

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Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 182
Target Start/End: Complemental strand, 32632696 - 32632522
Alignment:
Q  8 atagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcggcacaaat 107  Q
    ||||||||||||||||||||||||   |||||| ||||||| |  |||||||| | |||||||||||||||||| |||| || ||||||| |  | |||     
T  32632696 atagtggattgtttgattgctttcgtaagttctgcccaaacatggtctcctttttggatcctgtagtctatgtatgtatgaaacttgctttgtaagaaag 32632597  T
Q  108 caccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatatttcttca 182  Q
       |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  32632596 tttcgtaaagatggcttgtgaatccagcgcgagtgtcttcgcctctaaagctgatgaaaacatcatattttttca 32632522  T

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Target: chr8; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 5568713 - 5568533
Alignment:
Q  1 aagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcgg 100  Q
    |||||| | ||| |||||||||||||||||| | ||||||  ||||||||||||||||||||||||||| ||||||||||| ||||  |  | | |||||    
T  5568713 aagaaacagagttgattgtttgattgctttctcaagttctggccaaacttcatctcctttctcgatcctatagtctatgtaagtatgtaaataggttcgg 5568614  T
Q  101 cacaaatcaccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatatttcttc 181  Q
     | | | || ||| |||||| |||||||| ||||||||||| || || |||| |||||||||||| |||||||||||||||    
T  5568613 gaaagagcagcgtgaagatgacttgtgaaaccagcgcgagtatcttcgcctcgaaagctgatgaagacatcatatttcttc 5568533  T

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Target: chr8; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 14403283 - 14403107
Alignment:
Q  1 aagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcgg 100  Q
    |||||| | ||||||||||||||||||||| || ||||||  |||||| |||||||||||||||||| ||||||||||||||||||  |  | | |||||    
T  14403283 aagaaaaagagtggattgtttgattgctttaacaagttctgaccaaacatcatctcctttctcgatcttgtagtctatgtaggtatgtaaatgggttcgg 14403184  T
Q  101 cacaaatcaccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatattt 177  Q
    || | | || ||| ||||||||||||||| | ||  ||||| || || |||| ||||||||||||||||||||||||    
T  14403183 caaagagcagcgtgaagatggcttgtgaaacaagttcgagtatcttcgcctcgaaagctgatgaaaacatcatattt 14403107  T

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Target: chr8; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 5547554 - 5547373
Alignment:
Q  1 aagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcgg 100  Q
    |||||| | |||||||||||| ||||| ||||| |||||| ||||||||| ||||||||| || |||  || ||| ||||||||||  || |   |||||    
T  5547554 aagaaacaaagtggattgtttcattgccttcacaagttctgcccaaacttgatctcctttttcaatcaagttgtcaatgtaggtatggatatgttttcgg 5547455  T
Q  101 cacaaatcaccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatatttcttca 182  Q
    | |||| |    |||||||||||| |||| ||| |||| || || || |||| |||||||||||||||||||||||||||||    
T  5547454 cgcaaagctttataaagatggcttatgaaaccaacgcgtgtatcttcgcctcgaaagctgatgaaaacatcatatttcttca 5547373  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 5572528 - 5572439
Alignment:
Q  93 tgcttcggcacaaatcaccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatatttcttca 182  Q
    |||||||||||||| || ||| ||||||||||||||| |  || ||| |||| |  |||| |||||||||||||||||||||||| ||||    
T  5572528 tgcttcggcacaaagcagcgtgaagatggcttgtgaaacaggcacgattgtctttgcctcaaaagctgatgaaaacatcatattttttca 5572439  T

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Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 5562386 - 5562302
Alignment:
Q  1 aagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggta 85  Q
    |||||| | |||||||||||| ||||| ||||| |||||| ||||||||||||||||||| || |||  || ||| |||||||||    
T  5562386 aagaaacaaagtggattgtttcattgccttcacaagttctgcccaaacttcatctcctttttcaatcaagttgtcaatgtaggta 5562302  T

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Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 5572817 - 5572753
Alignment:
Q  20 ttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggt 84  Q
    |||||||||||||  ||||||  |||||||||||||||||| | |||||| ||||||||||||||    
T  5572817 ttgattgctttcaagagttctgtccaaacttcatctcctttttggatcctatagtctatgtaggt 5572753  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 12178863 - 12178924
Alignment:
Q  23 attgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggt 84  Q
    ||||||||  |||||||| ||||||| || |||||||| ||||| || ||||||||||||||    
T  12178863 attgctttttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtaggt 12178924  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 12423291 - 12423352
Alignment:
Q  23 attgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggt 84  Q
    ||||||||  |||||||| ||||||| || |||||||| ||||| || ||||||||||||||    
T  12423291 attgctttttctagttcttcccaaacctcttctcctttttcgattctatagtctatgtaggt 12423352  T

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Target: scaffold0363 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 15570 - 15746
Alignment:
Q  1 aagaaatatagtggattgtttgattgctttcactagttctacccaaacttcatctcctttctcgatcctgtagtctatgtaggtataaatcttgcttcgg 100  Q
    |||||| | ||||||||||||||||||||| || ||||||  |||||| |||||||||||||||||| ||||||||||||||||||  |  | | |||||    
T  15570 aagaaaaagagtggattgtttgattgctttaacaagttctgaccaaacatcatctcctttctcgatcttgtagtctatgtaggtatgtaaatgggttcgg 15669  T
Q  101 cacaaatcaccgtaaagatggcttgtgaatccagcgcgagtgtcatcacctctaaagctgatgaaaacatcatattt 177  Q
    || | | || ||| ||||||||||||||| | ||  ||||| || || |||| ||||||||||||||||||||||||    
T  15670 caaagagcagcgtgaagatggcttgtgaaacaagttcgagtatcttcgcctcgaaagctgatgaaaacatcatattt 15746  T

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