View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_high_4 (Length: 479)
Name: NF5063_high_4
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 459
Target Start/End: Complemental strand, 9137727 - 9137283
Alignment:
| Q |
13 |
aatatgtgatctcagaaccattctcagatttgctttgttaatttatttctacttgttagtgtttttgatgctatttactttttctactgaagtcatatct |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||| | |
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| T |
9137727 |
aatatgtgatctcagaaccattctcagatttgctttgttaatttacttctacttgttagtgtttttgatgctattt--tttacttactgaagtcatatat |
9137630 |
T |
|
| Q |
113 |
ctgttatctctataactaattatgactaatagaaaattgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaa |
212 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9137629 |
ctctcatctctataactaattatgactaatagaaaattgtaactaatatcattgagaaaatttacacctacttcgttcttttaattcttttcttttgtaa |
9137530 |
T |
|
| Q |
213 |
atttataatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgggtcaatcgtaaactatatagtatgtgtgtgagtatattttggttgaaa |
312 |
Q |
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| T |
9137529 |
atttataatttaaattctcaatttacattgtgagtgcatggcatcgtgatggctcaatcgtaaactatatagtatgtgtgtgagtatatttttgttgaaa |
9137430 |
T |
|
| Q |
313 |
ctcgaaagaaataggaatatagattctcttatttggcttgttaaagaaatttcttctcgatcaacaaccaaaggatattcttgtaaaattttctccaagt |
412 |
Q |
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| T |
9137429 |
ctcgaaagaaataggaatatagattctctcatttggcttgttaaagaagtttcttctcgatcaacaaccaaaggatattcttgtaaaattttctccaagt |
9137330 |
T |
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| Q |
413 |
tttgtcttgaccagaaagccaaaacgatgtaggcaatggtctcgcag |
459 |
Q |
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| T |
9137329 |
tttgtcttgaccagaaagccataacgatgtgggcaatggtctcgcag |
9137283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 8040412 - 8040306
Alignment:
| Q |
118 |
atctctataactaattatgactaatagaaaa-ttgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgta--aat |
214 |
Q |
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|||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||| |
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| T |
8040412 |
atctctctaactaattatgactaatagaaaaattgtaacatatatctgtgtgaaaatttacacctacttctttcttttaattctttacttttgtagtaat |
8040313 |
T |
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| Q |
215 |
ttataat |
221 |
Q |
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||||||| |
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| T |
8040312 |
ttataat |
8040306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 264
Target Start/End: Complemental strand, 31326473 - 31326331
Alignment:
| Q |
119 |
tctctataactaattatgactaatag-aaaattgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaaattta |
217 |
Q |
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|||| ||||||||| ||||||||||| ||||||||| | |||||||| || ||||||||||||||||| ||||||| | | |||||||| ||| || | |
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| T |
31326473 |
tctcaataactaatcatgactaatagaaaaattgta--aaatatctgtgag-aaatttacacctacttctttcttttta-tattttctttcataacttca |
31326378 |
T |
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| Q |
218 |
taatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgg |
264 |
Q |
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| T |
31326377 |
taatttataatgtcgatttacattgcaagggcatggcatcttgatgg |
31326331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 264
Target Start/End: Complemental strand, 31373922 - 31373780
Alignment:
| Q |
119 |
tctctataactaattatgactaatagaaaa-ttgtaacatatatctgtcagaaaatttacacctacttcgttcttttaattcttttcttttgtaaattta |
217 |
Q |
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|||| |||||||| ||||||||||||||| |||||| |||| |||| ||||| |||||||||||||| ||||||| | | |||||||| ||| || | |
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| T |
31373922 |
tctcaataactaaacatgactaatagaaaaattgtaaaatat--ctgtgagaaa-tttacacctacttctttcttttta-tattttctttcataacttca |
31373827 |
T |
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| Q |
218 |
taatttgcaatctcaatttacattgtgagtgcatggcatcgtgatgg |
264 |
Q |
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| T |
31373826 |
taatttataatgtcgatttacattgcaagggcatggcatcttgatgg |
31373780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 432
Target Start/End: Complemental strand, 31402756 - 31402716
Alignment:
| Q |
392 |
cttgtaaaattttctccaagttttgtcttgaccagaaagcc |
432 |
Q |
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| T |
31402756 |
cttgtaaaattttctccagattttgtcttgaccaaaaagcc |
31402716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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