View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5063_high_7 (Length: 452)

Name: NF5063_high_7
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5063_high_7
NF5063_high_7
[»] chr3 (3 HSPs)
chr3 (19-437)||(48950721-48951153)
chr3 (324-378)||(44112030-44112084)
chr3 (341-378)||(48050687-48050724)
[»] chr5 (2 HSPs)
chr5 (334-378)||(3495329-3495373)
chr5 (75-123)||(42147608-42147656)
[»] scaffold0027 (1 HSPs)
scaffold0027 (329-376)||(25758-25805)
[»] chr4 (5 HSPs)
chr4 (324-376)||(35850096-35850148)
chr4 (231-289)||(9277258-9277316)
chr4 (343-376)||(17621942-17621975)
chr4 (225-289)||(29540226-29540290)
chr4 (334-378)||(40763766-40763810)
[»] chr7 (1 HSPs)
chr7 (303-376)||(44680253-44680326)
[»] chr2 (1 HSPs)
chr2 (344-376)||(38205140-38205172)


Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 437
Target Start/End: Original strand, 48950721 - 48951153
Alignment:
Q  19 ctcaactcatccacacccaaagtcgttt--gagattttggagagcctagaacaagcctacaatttaggcactaactaataagtatatataaaagtttaat 116  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48950721 ctcaactcatccacacccaaagtcgtttttgagattttggagagcctagaacaagcctacaatttaggctctaactaataagtatatataaaagtttaat 48950820  T
Q  117 tcccaaagtttg------------tttgaagatgaagttttattatgttaagaaataatttgataaaacatcaaacttcatacnnnnnnncattcaatat 204  Q
    ||||||||||||            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        |||| |||||    
T  48950821 tcccaaagtttgaaaaaaatattgtttgaagatgaagttttattacgttaagaaataatttgataaaacatcaaacttcataaaaaaaaacattgaatat 48950920  T
Q  205 ttatttaatatcaaaatgtccatacaagcatttgtatatgcagagtcactaataattgtgtctatattaatatgctctatcatatataaaattactagat 304  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48950921 ttatttaatatcaaaatgtccattcgagcatttgtatatgcagagtcactaataattgtgtctatattaatatgctctatcatatataaaattactagat 48951020  T
Q  305 catcaaacttttattgtcccattgacggcctcaaataatttttcaataattttaactttgaaaaacttcttttggcagatgcaataaacattaaaaaagt 404  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||| |||||||    
T  48951021 catcaaacttttattgtcccgttgacggcctcaaataatttttcaataattttaattttgaaaaacttctttctgcagatgcaataaacattgaaaaagt 48951120  T
Q  405 tcaacagctcagtaaaacattgaaacatttgga 437  Q
    |||| |||||||||||||||||||| |||||||    
T  48951121 tcaatagctcagtaaaacattgaaatatttgga 48951153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 378
Target Start/End: Complemental strand, 44112084 - 44112030
Alignment:
Q  324 cattgacggcctcaaataatttttcaataattttaactttgaaaaacttcttttg 378  Q
    ||||||||  ||||| || |||||||||||||||||||| |||||||||||||||    
T  44112084 cattgacgatctcaagtagtttttcaataattttaacttcgaaaaacttcttttg 44112030  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 48050724 - 48050687
Alignment:
Q  341 aatttttcaataattttaactttgaaaaacttcttttg 378  Q
    |||||||||||||||||||||| |||||||||||||||    
T  48050724 aatttttcaataattttaacttcgaaaaacttcttttg 48050687  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 3495329 - 3495373
Alignment:
Q  334 ctcaaataatttttcaataattttaactttgaaaaacttcttttg 378  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  3495329 ctcaaataatttttcaataattttaacttcgaaaaacttcttttg 3495373  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 42147656 - 42147608
Alignment:
Q  75 acaatttaggcactaactaataagtatatataaaagtttaattcccaaa 123  Q
    ||||| ||| |||||||||||||||||| |||||| || ||||||||||    
T  42147656 acaatctagacactaactaataagtataaataaaatttgaattcccaaa 42147608  T

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Target: scaffold0027 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 376
Target Start/End: Original strand, 25758 - 25805
Alignment:
Q  329 acggcctcaaataatttttcaataattttaactttgaaaaacttcttt 376  Q
    |||| |||||| |||||||||||||||||||||| |||||||||||||    
T  25758 acggtctcaaacaatttttcaataattttaacttcgaaaaacttcttt 25805  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 35850096 - 35850148
Alignment:
Q  324 cattgacggcctcaaataatttttcaataattttaactttgaaaaacttcttt 376  Q
    ||||||||  ||||| ||||||||||| |||||||||||| ||||||||||||    
T  35850096 cattgacgatctcaagtaatttttcaacaattttaacttttaaaaacttcttt 35850148  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 9277316 - 9277258
Alignment:
Q  231 agcatttgtatatgcagagtcactaataattgtgtctatattaatatgctctatcatat 289  Q
    ||||||| |||||||| | |||||||||||||||| || ||||||||  ||||||||||    
T  9277316 agcatttttatatgcaaattcactaataattgtgtttacattaatattttctatcatat 9277258  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 17621942 - 17621975
Alignment:
Q  343 tttttcaataattttaactttgaaaaacttcttt 376  Q
    |||||||||||||||||||| |||||||||||||    
T  17621942 tttttcaataattttaacttcgaaaaacttcttt 17621975  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 29540226 - 29540290
Alignment:
Q  225 catacaagcatttgtatatgcagagtcactaataattgtgtctatattaatatgctctatcatat 289  Q
    |||||||| |||| || ||||| ||||| ||||||||||||||| || |||||  ||||||||||    
T  29540226 catacaagtatttctagatgcaaagtcattaataattgtgtctacatcaatatattctatcatat 29540290  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 40763766 - 40763810
Alignment:
Q  334 ctcaaataatttttcaataattttaactttgaaaaacttcttttg 378  Q
    |||| ||||||||||||||||||||||||  |||| |||||||||    
T  40763766 ctcagataatttttcaataattttaacttcaaaaatcttcttttg 40763810  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 376
Target Start/End: Complemental strand, 44680326 - 44680253
Alignment:
Q  303 atcatcaaacttttattgtcccattgacggcctcaaataatttttcaataattttaactttgaaaaacttcttt 376  Q
    |||||| ||||||| ||||  ||||||||   | ||||| ||||| |||||||||||||| |||||||||||||    
T  44680326 atcatccaactttttttgtgacattgacgatattaaatagtttttgaataattttaacttcgaaaaacttcttt 44680253  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 38205172 - 38205140
Alignment:
Q  344 ttttcaataattttaactttgaaaaacttcttt 376  Q
    ||||||||||||||||||| |||||||||||||    
T  38205172 ttttcaataattttaacttagaaaaacttcttt 38205140  T

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