View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_high_8 (Length: 430)
Name: NF5063_high_8
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 47829333 - 47829079
Alignment:
| Q |
1 |
tgtgtgagtttggggagaagagtagtgttgattaattccgttctcacttctattctcatattctattggtgtgcaaagcactcaaagccatagaaccaaa |
100 |
Q |
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| T |
47829333 |
tgtgtgagtttggggagaagagtagtgttgattaattccgttctcacttctattctcatattctattggtgtgcaaagcactcaaagccatagaaccaaa |
47829234 |
T |
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| Q |
101 |
taatacacaagcaaattacgttttattttctttccataaacagtagtagatacaatacaatcaaattaaaatacataaactaagcccctggaaacattca |
200 |
Q |
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| T |
47829233 |
taatacacaagcaaattacgttttattttctttccataaacagtagtagatacaatacaatcaaattaaaatacataaactaagcccctggaaacattca |
47829134 |
T |
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| Q |
201 |
ttaatgttaacaat---aatatacatatatatgtgcaagtagtttcttccttctc |
252 |
Q |
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| T |
47829133 |
ttaatgttaacaataataatatacatatatatgtgcaagtagtttcttccttctc |
47829079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 249 - 413
Target Start/End: Complemental strand, 47829012 - 47828848
Alignment:
| Q |
249 |
tctctgcaaatatatcannnnnnnattttagaagaaaaattattaattggcttctgattattttttccatgataactagaaaacccaattagtaatttcc |
348 |
Q |
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| T |
47829012 |
tctctgcaaatatatcatttttttattttagaagaaaaattattaattggcttctgattattctttccatgataactagaaaagccaattagtaatttcc |
47828913 |
T |
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| Q |
349 |
cttctaccgtagtgataataattggtttagtactagtgacaagttgttgtttaatagaaaacatg |
413 |
Q |
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| T |
47828912 |
cttctaccgtagtgataataattggtttagtactagtgacaagttgttgtttaatagaaaacatg |
47828848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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