View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5063_low_11 (Length: 380)
Name: NF5063_low_11
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 34833439 - 34833746
Alignment:
| Q |
1 |
tatagatatctatttacatccctatacataactaaacatttgatatattgaggtctgagttcaaatctacaattgatctcttctccacactgatttaacc |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
34833439 |
tatagatatctatttgcatccctatacataactaaacatttgatatatggaggtctgaattcaaatctacaactgatctcttctccacactgatttaacc |
34833538 |
T |
|
| Q |
101 |
attagactctttnnnnnnnnnnnnnnnnnngtgatttctagccaaatacacacctggtatgaaaccatttacaatcatatgttacaggaaaacaatttaa |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34833539 |
attagactctttaaaaacaaaaacaaaaaagtgatttctagccaaatacacacctggtatgaaaccatttacaatcatatgttacaggaaaacaatttaa |
34833638 |
T |
|
| Q |
201 |
tttcattatttgattattttaatactttgtacaaaaatacttacatgttacttaaactgttttccatagttttacataatatataatagcacaaattaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34833639 |
tttcattatttgattattttaatactttgtacaaaaacacttacatgttacttaaactgttttccatagttttacataatatataatagcacaaattaaa |
34833738 |
T |
|
| Q |
301 |
tagatgac |
308 |
Q |
| |
|
|||||||| |
|
|
| T |
34833739 |
tagatgac |
34833746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 304 - 364
Target Start/End: Original strand, 34841552 - 34841612
Alignment:
| Q |
304 |
atgacacatcatacacttttaaacattgttgttaaaatctaggattttgcgactttattca |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
34841552 |
atgacacatcatacacttttaaacattgttgttaaaatttaggattctgcgactttattca |
34841612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University