View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5063_low_12 (Length: 373)

Name: NF5063_low_12
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5063_low_12
NF5063_low_12
[»] chr4 (19 HSPs)
chr4 (19-292)||(26355033-26355294)
chr4 (223-276)||(39232801-39232854)
chr4 (223-288)||(4206206-4206272)
chr4 (223-288)||(4206886-4206952)
chr4 (223-288)||(39232103-39232169)
chr4 (223-288)||(51539821-51539887)
chr4 (223-288)||(51540508-51540574)
chr4 (225-289)||(29379724-29379789)
chr4 (225-288)||(2520306-2520370)
chr4 (225-288)||(2519559-2519622)
chr4 (223-288)||(49603417-49603483)
chr4 (223-288)||(49604095-49604161)
chr4 (225-288)||(29380473-29380537)
chr4 (227-276)||(46513686-46513736)
chr4 (225-281)||(14090722-14090778)
chr4 (226-270)||(2528689-2528733)
chr4 (244-286)||(25699311-25699353)
chr4 (246-278)||(441328-441360)
chr4 (223-278)||(47594188-47594244)
[»] chr8 (14 HSPs)
chr8 (223-288)||(28824803-28824868)
chr8 (223-288)||(28824124-28824190)
chr8 (223-288)||(29555507-29555573)
chr8 (223-288)||(29556193-29556259)
chr8 (223-288)||(38376206-38376272)
chr8 (223-288)||(44445967-44446033)
chr8 (225-289)||(39774315-39774380)
chr8 (225-288)||(5157230-5157294)
chr8 (223-288)||(5156551-5156617)
chr8 (223-288)||(44446645-44446711)
chr8 (223-268)||(38376912-38376957)
chr8 (225-288)||(5157974-5158038)
chr8 (225-288)||(39773567-39773631)
chr8 (225-276)||(14857949-14858001)
[»] chr7 (14 HSPs)
chr7 (223-288)||(47942011-47942076)
chr7 (223-288)||(33256407-33256472)
chr7 (223-284)||(22377353-22377415)
chr7 (223-288)||(33255720-33255786)
chr7 (223-288)||(47942689-47942755)
chr7 (223-288)||(47948119-47948185)
chr7 (225-289)||(7331861-7331926)
chr7 (225-288)||(7331113-7331177)
chr7 (225-276)||(34151599-34151651)
chr7 (225-276)||(34175473-34175525)
chr7 (225-288)||(16959596-16959658)
chr7 (225-276)||(31724186-31724238)
chr7 (225-288)||(16941089-16941151)
chr7 (244-288)||(48843199-48843244)
[»] chr5 (13 HSPs)
chr5 (223-288)||(2600832-2600897)
chr5 (223-288)||(2601518-2601583)
chr5 (223-288)||(4275564-4275630)
chr5 (223-288)||(4276250-4276316)
chr5 (223-288)||(31230116-31230182)
chr5 (225-289)||(3341587-3341652)
chr5 (225-289)||(3358496-3358561)
chr5 (223-288)||(31229429-31229495)
chr5 (225-289)||(3342335-3342400)
chr5 (225-289)||(3359244-3359309)
chr5 (225-288)||(11377286-11377349)
chr5 (225-276)||(11376943-11376995)
chr5 (230-281)||(5233770-5233822)
[»] chr3 (13 HSPs)
chr3 (223-288)||(47861776-47861841)
chr3 (223-281)||(30733610-30733669)
chr3 (223-288)||(11503677-11503743)
chr3 (223-288)||(47862462-47862528)
chr3 (223-288)||(48222324-48222390)
chr3 (223-288)||(48223004-48223070)
chr3 (225-288)||(6588547-6588610)
chr3 (226-288)||(53302951-53303014)
chr3 (226-288)||(1194099-1194162)
chr3 (223-288)||(11504363-11504429)
chr3 (242-288)||(53303635-53303681)
chr3 (223-291)||(16073637-16073704)
chr3 (242-276)||(25749094-25749128)
[»] chr1 (19 HSPs)
chr1 (223-288)||(250362-250427)
chr1 (223-288)||(11625286-11625351)
chr1 (225-289)||(35813295-35813359)
chr1 (223-288)||(36180409-36180475)
chr1 (223-288)||(47708508-47708574)
chr1 (225-289)||(9088439-9088504)
chr1 (223-288)||(36179716-36179781)
chr1 (225-289)||(45881505-45881570)
chr1 (225-288)||(35814029-35814093)
chr1 (225-288)||(45880757-45880821)
chr1 (223-288)||(249682-249748)
chr1 (223-276)||(11625984-11626038)
chr1 (225-281)||(9087691-9087748)
chr1 (225-289)||(32516812-32516877)
chr1 (244-288)||(32517561-32517605)
chr1 (227-281)||(27039101-27039155)
chr1 (223-276)||(51588632-51588684)
chr1 (230-281)||(42308902-42308954)
chr1 (225-276)||(51590774-51590826)
[»] chr6 (13 HSPs)
chr6 (223-288)||(304973-305039)
chr6 (223-288)||(305646-305712)
chr6 (223-288)||(644100-644166)
chr6 (223-288)||(33775568-33775634)
chr6 (223-288)||(22509755-22509819)
chr6 (225-297)||(23950041-23950114)
chr6 (226-288)||(33776247-33776310)
chr6 (223-288)||(644779-644845)
chr6 (225-288)||(26275430-26275494)
chr6 (226-288)||(19803381-19803444)
chr6 (223-279)||(8208111-8208167)
chr6 (242-288)||(26276178-26276224)
chr6 (242-288)||(23949148-23949193)
[»] chr2 (11 HSPs)
chr2 (223-288)||(1389085-1389151)
chr2 (223-288)||(22424720-22424786)
chr2 (225-289)||(21647602-21647667)
chr2 (225-288)||(29982153-29982217)
chr2 (225-288)||(29982902-29982966)
chr2 (225-288)||(37644407-37644471)
chr2 (223-288)||(22424033-22424099)
chr2 (225-286)||(37645158-37645220)
chr2 (225-289)||(21648350-21648415)
chr2 (225-289)||(15321814-15321880)
chr2 (225-276)||(15167824-15167876)
[»] scaffold0181 (2 HSPs)
scaffold0181 (227-289)||(18059-18122)
scaffold0181 (225-288)||(17311-17375)


Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 292
Target Start/End: Original strand, 26355033 - 26355294
Alignment:
Q  19 acagaagcggaatggaaggtttttgagcgaaggttctagaacgattcgcgaaggaagtggaagccactctcgccgctgatttacagaacgaagaagccat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26355033 acagaagcggaatggaaggtttttgagcgaaggttctagaacgattcgcgaaggaagtggaagccactctcgccgctgatttacagaacgaagaagccat 26355132  T
Q  119 tgctgaagaaggttactgattcgaatagtgaacaccgctggtgcctggcttgaaccctaaactcaactgttattgggcttgctcaatttatcacac-nnn 217  Q
    |||||||||||||||||||||             ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  26355133 tgctgaagaaggttactgatt-------------ccgctagtgcctggcttgaaccctaaactcaactgttattgggcttgctcaatttatcacacactt 26355219  T
Q  218 nnnnnaagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttatacttt 292  Q
         ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  26355220 tttttaagattgctttttaggcctcccaatatctgtttaggccccctaataatacaaaattaacttttatacttt 26355294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 39232854 - 39232801
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaa 276  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39232854 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaa 39232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 4206206 - 4206272
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4206206 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 4206272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 4206952 - 4206886
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4206952 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 4206886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 39232103 - 39232169
Alignment:
Q  223 aagattgctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||    
T  39232103 aagattgctttttaggcccctccaatatctctttaggccccctaaaaatacaaaaataacctttata 39232169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 51539821 - 51539887
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  51539821 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 51539887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 51540574 - 51540508
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  51540574 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 51540508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 29379724 - 29379789
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  29379724 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 29379789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 2520370 - 2520306
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  2520370 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 2520306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 2519559 - 2519622
Alignment:
Q  225 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||||  |||||||||||||||||||| ||||||||||||| |||| ||||||    
T  2519559 gattgctttttaggccctccaatatctctttaggccccttaaaaatacaaaaataacctttata 2519622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 49603417 - 49603483
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||||||||||||| |||| ||||||    
T  49603417 aagattgctttttaggcccccccaatatctctttaagccccctaaaaatacaaaaataacctttata 49603483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 49604161 - 49604095
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  49604161 aagattgcttttcaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 49604095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 29380537 - 29380473
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || ||||||||||||||| ||||||||||||||||| |||| ||||||    
T  29380537 gattgctttttaggccccctcaatatctctttaggtcccctaaaaatacaaaaataacctttata 29380473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 276
Target Start/End: Complemental strand, 46513736 - 46513686
Alignment:
Q  227 ttgctttttaggcctcccaa-tatctctttaggccccctaaaaatacaaaa 276  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  46513736 ttgctttttaggccccccaaatatctctttaggccccctaaaaatacaaaa 46513686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 14090722 - 14090778
Alignment:
Q  225 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaac 281  Q
    |||||||||||||| |||||||||||| ||||||||||| |||||||| ||| ||||    
T  14090722 gattgctttttaggtctcccaatatctatttaggcccccaaaaaatacgaaaataac 14090778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 270
Target Start/End: Complemental strand, 2528733 - 2528689
Alignment:
Q  226 attgctttttaggcctcccaatatctctttaggccccctaaaaat 270  Q
    ||||||||||||||| || |||||||||||||| |||||||||||    
T  2528733 attgctttttaggccccctaatatctctttaggtcccctaaaaat 2528689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 25699311 - 25699353
Alignment:
Q  244 caatatctctttaggccccctaaaaatacaaaattaactttta 286  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||    
T  25699311 caatatctctttaggccccctaaaaatacgaaaataaccttta 25699353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 441328 - 441360
Alignment:
Q  246 atatctctttaggccccctaaaaatacaaaatt 278  Q
    ||||||||||||||||||||||| |||||||||    
T  441328 atatctctttaggccccctaaaattacaaaatt 441360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 47594244 - 47594188
Alignment:
Q  223 aagattgctttttaggcctccca-atatctctttaggccccctaaaaatacaaaatt 278  Q
    |||||| |||||||||||||||  || |||||||||||||||||||| || ||||||    
T  47594244 aagattcctttttaggcctccctcatgtctctttaggccccctaaaattataaaatt 47594188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 28824868 - 28824803
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  28824868 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 28824803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 28824124 - 28824190
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  28824124 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 28824190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 29555507 - 29555573
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  29555507 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 29555573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 29556259 - 29556193
Alignment:
Q  223 aagattgctttttagg-cctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  29556259 aagattgctttttaggtccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 29556193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 38376206 - 38376272
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  38376206 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 38376272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 44445967 - 44446033
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  44445967 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 44446033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 39774380 - 39774315
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  39774380 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 39774315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 5157294 - 5157230
Alignment:
Q  225 gattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  5157294 gattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 5157230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 5156551 - 5156617
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  5156551 aagatttctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 5156617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 44446711 - 44446645
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||| ||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  44446711 aagattgcttttcaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 44446645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 38376957 - 38376912
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaa 268  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  38376957 aagattgctttttaggccccccaatatctctttaggccccctaaaa 38376912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 5158038 - 5157974
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||||||||| |||| ||||||    
T  5158038 gattgctttttaggccccctcaatatctctttaggcctcctaaaaatacaaaaataacctttata 5157974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 39773567 - 39773631
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||| ||||||    
T  39773567 gattgctttttaggccccctcaatatctctttaggccccctaaaaattcaaaaataacctttata 39773631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 14858001 - 14857949
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 276  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  14858001 gattgctttttaggccccctcaatatctctttaggccccctaaagatacaaaa 14857949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 47942011 - 47942076
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  47942011 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 47942076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 33256472 - 33256407
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||| ||||||    
T  33256472 aagattgctttttaggccccccaatatctctttaggccccctaaaagtacaaaaataacctttata 33256407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 22377415 - 22377353
Alignment:
Q  223 aagattgctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaacttt 284  Q
    |||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  22377415 aagattgctttttaggcccctccagtatctctttaggccccctaaaaatacaaaattaacttt 22377353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 33255720 - 33255786
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  33255720 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 33255786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 47942755 - 47942689
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  47942755 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 47942689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 47948185 - 47948119
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  47948185 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 47948119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 7331926 - 7331861
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  7331926 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 7331861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 7331113 - 7331177
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  7331113 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 7331177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 34151599 - 34151651
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 276  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  34151599 gattgctttttaggccccctcaatatctctttaggccccctaaagatacaaaa 34151651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 34175525 - 34175473
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 276  Q
    |||||||||||||||| || |||||||||||||||||||||||| ||||||||    
T  34175525 gattgctttttaggccccctcaatatctctttaggccccctaaagatacaaaa 34175473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 16959658 - 16959596
Alignment:
Q  225 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||| ||| |||||||||||||||||| |||||||||||  ||| |||||||||||    
T  16959658 gattgctttttacgcc-cccaatatctctttaggctccctaaaaatatgaaaataacttttata 16959596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 31724238 - 31724186
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 276  Q
    |||||||||||||||| || |||||||| |||||||||| |||||||||||||    
T  31724238 gattgctttttaggccccctcaatatctatttaggccccttaaaaatacaaaa 31724186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 16941151 - 16941089
Alignment:
Q  225 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||| ||| |||| ||||||||||||| |||||||||||  ||| |||||||||||    
T  16941151 gattgctttttacgcc-cccagtatctctttaggctccctaaaaatatgaaaataacttttata 16941089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 48843199 - 48843244
Alignment:
Q  244 caatatctctttaggccccctaaaaatac-aaaattaacttttata 288  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||    
T  48843199 caatatctctttaggccccctaaaaatacgaaaaataacctttata 48843244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 2600832 - 2600897
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  2600832 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 2600897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 2601583 - 2601518
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  2601583 aagattgctttttaggccccccaatatctctttaggcctcctaaaaatacaaaaataacctttata 2601518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 4275564 - 4275630
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4275564 aagattgctttttaggcccccctaatatctctttaggccccctaaaaatacaaaaataacctttata 4275630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 4276316 - 4276250
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4276316 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 4276250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 31230182 - 31230116
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  31230182 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 31230116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 3341587 - 3341652
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  3341587 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 3341652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 3358496 - 3358561
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  3358496 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 3358561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 31229429 - 31229495
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||||||| |||| ||||||    
T  31229429 aagattgctttttaggcccccccaatatctctttaggccccctaaaagtacaaaaataacctttata 31229495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 3342400 - 3342335
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||| |||| |||||||    
T  3342400 gattgctttttaggccccctcaatatctctttagaccccctaaaaatacaaaaataacctttatac 3342335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 3359309 - 3359244
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||| |||| |||||||    
T  3359309 gattgctttttaggccccctcaatatctctttagaccccctaaaaatacaaaaataacctttatac 3359244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 11377286 - 11377349
Alignment:
Q  225 gattgctttttaggcctcccaatatctctttaggccccctaaaaatac-aaaattaacttttata 288  Q
    |||||||||||||||| |||||||||||||| | |||||||||||||| |||| |||||||||||    
T  11377286 gattgctttttaggcc-cccaatatctctttggtccccctaaaaatacaaaaaataacttttata 11377349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 11376943 - 11376995
Alignment:
Q  225 gattgctttttaggcctcccaatatctctttag-gccccctaaaaatacaaaa 276  Q
    |||||||||||||||| |||||||||||||| |  ||||||||||||||||||    
T  11376943 gattgctttttaggccccccaatatctctttggtcccccctaaaaatacaaaa 11376995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 5233770 - 5233822
Alignment:
Q  230 ctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaac 281  Q
    ||||||||||| | ||||||||| ||||||||| |||||||||||||| ||||    
T  5233770 ctttttaggcccctccaatatctttttaggccctctaaaaatacaaaaataac 5233822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 47861776 - 47861841
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  47861776 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 47861841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 281
Target Start/End: Original strand, 30733610 - 30733669
Alignment:
Q  223 aagattgctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaac 281  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  30733610 aagattgctttttaggcccctccaatatctctttaggccccctaaaaatacaaaattaac 30733669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 11503677 - 11503743
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  11503677 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 11503743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 47862528 - 47862462
Alignment:
Q  223 aagattgctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||    
T  47862528 aagattgctttttaggcccctccaatatctctttaggccccctaaaaatacaaaaataacctttata 47862462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 48222324 - 48222390
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  48222324 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 48222390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 48223070 - 48223004
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  48223070 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 48223004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 6588547 - 6588610
Alignment:
Q  225 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||| || | ||||||||||||||||||||||||||||||||| |||| ||||||    
T  6588547 gattgctttttagccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 6588610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 53302951 - 53303014
Alignment:
Q  226 attgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  53302951 attgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 53303014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 1194099 - 1194162
Alignment:
Q  226 attgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||||||| |||| ||||||    
T  1194099 attgctttttaggccccctcaatatctctttaggccccccaaaaatacaaaaataacctttata 1194162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 11504429 - 11504363
Alignment:
Q  223 aagattgctttttaggc-ctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||||| | |||||||||| |||||||||| ||||||||||||| |||| ||||||    
T  11504429 aagattgctttttaggctcccccaatatctttttaggccccttaaaaatacaaaaataacctttata 11504363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 53303681 - 53303635
Alignment:
Q  242 cccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  53303681 cccaatatctctttaggccccctaaaaatacaaaaataacctttata 53303635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 16073637 - 16073704
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttatactt 291  Q
    |||||||||||| ||||| || ||||||||||| ||||||| ||||||||||||||||| ||| |||||    
T  16073637 aagattgctttt-aggcccccaaatatctctttgggccccccaaaaatacaaaattaacctttgtactt 16073704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 276
Target Start/End: Complemental strand, 25749128 - 25749094
Alignment:
Q  242 cccaatatctctttaggccccctaaaaatacaaaa 276  Q
    |||||||||| ||||||||||||||||||||||||    
T  25749128 cccaatatctttttaggccccctaaaaatacaaaa 25749094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 250427 - 250362
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  250427 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 250362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 11625286 - 11625351
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||    
T  11625286 aagattgctttttaggccccccaatatctctttaggccccctaaaaatacaaaaataacatttata 11625351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 35813295 - 35813359
Alignment:
Q  225 gattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||    
T  35813295 gattgctttttaggcccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 35813359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 36180475 - 36180409
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  36180475 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 36180409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 47708574 - 47708508
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  47708574 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 47708508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 9088504 - 9088439
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  9088504 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 9088439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 36179716 - 36179781
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  36179716 aagattgctttttaggtcccccaatatctctttaggcctcctaaaaatacaaaaataacctttata 36179781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 45881570 - 45881505
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  45881570 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 45881505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 35814093 - 35814029
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  35814093 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 35814029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 45880757 - 45880821
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  45880757 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 45880821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 249682 - 249748
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |||| ||||||    
T  249682 aagattgctttttaggcccccccaatatctctttagaccccctaaaaatacaaaaataacctttata 249748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 276
Target Start/End: Complemental strand, 11626038 - 11625984
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaa 276  Q
    |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  11626038 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaa 11625984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 9087691 - 9087748
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaac 281  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||    
T  9087691 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataac 9087748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 32516812 - 32516877
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || ||||||||||||| | ||||||||||||||||| |||| |||||||    
T  32516812 gattgctttttaggccccctcaatatctctttaagtcccctaaaaatacaaaaataacctttatac 32516877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 32517605 - 32517561
Alignment:
Q  244 caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||    
T  32517605 caatatctctttaggccccctaaaaatacaaaaataacctttata 32517561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Complemental strand, 27039155 - 27039101
Alignment:
Q  227 ttgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaac 281  Q
    ||||| |||||||| |||||||||| |||| ||||||||||||||| ||||||||    
T  27039155 ttgctctttaggccccccaatatctttttaagccccctaaaaatacgaaattaac 27039101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 276
Target Start/End: Original strand, 51588632 - 51588684
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaa 276  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||  |||||||    
T  51588632 aagattgctttttaggc-tctcaatatctcttcaggccccctaaagttacaaaa 51588684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 42308954 - 42308902
Alignment:
Q  230 ctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaac 281  Q
    ||||||||||| | ||||||||| |||||||| ||||||||||||||| ||||    
T  42308954 ctttttaggcccctccaatatctttttaggcctcctaaaaatacaaaaataac 42308902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 51590826 - 51590774
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 276  Q
    ||||||||||||| || || |||||||||||||||| |||||||| |||||||    
T  51590826 gattgctttttagacccccacaatatctctttaggcaccctaaaactacaaaa 51590774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 9e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 304973 - 305039
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  304973 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 305039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 305712 - 305646
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  305712 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 305646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 644100 - 644166
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  644100 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 644166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 33775568 - 33775634
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  33775568 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 33775634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 22509755 - 22509819
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||||||    
T  22509755 aagattgctttttaggcc-cccaatatctctttagaccccctaaaaatacaaaaataacgtttata 22509819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 23950114 - 23950041
Alignment:
Q  225 gattgctttttaggcctc-ccaatatctctttaggccccctaaaaatacaaaattaacttttatactttaaaac 297  Q
    |||||||||||||||  | ||||||||||||||||||||||||||||||||||||||| |||||| || |||||    
T  23950114 gattgctttttaggctcctccaatatctctttaggccccctaaaaatacaaaattaacctttataattaaaaac 23950041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 33776310 - 33776247
Alignment:
Q  226 attgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  33776310 attgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 33776247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 644845 - 644779
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||| || ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  644845 aagattgctttttagacccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 644779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 26275430 - 26275494
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || |||||||||||||||||| |||||||||||||| |||| ||||||    
T  26275430 gattgctttttaggccccctcaatatctctttaggccctctaaaaatacaaaaataacctttata 26275494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 288
Target Start/End: Original strand, 19803381 - 19803444
Alignment:
Q  226 attgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||| || ||||||||||||||||||||| ||||||||||| |||| ||||||    
T  19803381 attgctttttaggccccctcaatatctctttaggccccctgaaaatacaaaaataacctttata 19803444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 8208111 - 8208167
Alignment:
Q  223 aagattgctttttaggcctcccaatatctctttaggccccctaaaaatacaaaatta 279  Q
    |||||||||||||||||| |||| | ||||||||||| |||||||||| ||||||||    
T  8208111 aagattgctttttaggccccccagtttctctttaggctccctaaaaatccaaaatta 8208167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 26276224 - 26276178
Alignment:
Q  242 cccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  26276224 cccaatatctctttaggtcccctaaaaatacaaaaataacctttata 26276178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 23949148 - 23949193
Alignment:
Q  242 cccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||    
T  23949148 cccaatatctctttag-ccccttaaaaatacaaaattaacctttata 23949193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 1389151 - 1389085
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  1389151 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 1389085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 288
Target Start/End: Complemental strand, 22424786 - 22424720
Alignment:
Q  223 aagattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  22424786 aagattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 22424720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 21647602 - 21647667
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  21647602 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 21647667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 29982153 - 29982217
Alignment:
Q  225 gattgctttttaggcc-tcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  29982153 gattgctttttaggccctctcaatatctctttaggccccctaaaaatacaaaaataacctttata 29982217  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 29982966 - 29982902
Alignment:
Q  225 gattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  29982966 gattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataacctttata 29982902  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 37644407 - 37644471
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||    
T  37644407 gattgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttata 37644471  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 288
Target Start/End: Original strand, 22424033 - 22424099
Alignment:
Q  223 aagattgctttttaggc-ctcccaatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |||| ||||||    
T  22424033 aagattgctttttaggctcccccaatatctctttaggccccttaaaaatacaaaaataacctttata 22424099  T

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Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 37645220 - 37645158
Alignment:
Q  225 gattgctttttaggcctccc-aatatctctttaggccccctaaaaatacaaaattaactttta 286  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||    
T  37645220 gattgctttttaggcccccccaatatctctttaggccccctaaaaatacaaaaataaccttta 37645158  T

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Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 21648415 - 21648350
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||||| || |||||||||||||| |||||||||||||||||| |||| |||||||    
T  21648415 gattgctttttaggccccctcaatatctctttagaccccctaaaaatacaaaaataacctttatac 21648350  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 289
Target Start/End: Original strand, 15321814 - 15321880
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaat-acaaaattaacttttatac 289  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||| |||||| |||| |||||||    
T  15321814 gattgctttttaagccccctcaatatctctttaggccccctaaaaataacaaaaataacctttatac 15321880  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 276
Target Start/End: Complemental strand, 15167876 - 15167824
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaa 276  Q
    ||||||||||||| || || |||||||||||||||||||||||| ||||||||    
T  15167876 gattgctttttagaccccctcaatatctctttaggccccctaaagatacaaaa 15167824  T

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Target: scaffold0181 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 18122 - 18059
Alignment:
Q  227 ttgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttatac 289  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||    
T  18122 ttgctttttaggccccctcaatatctctttaggccccctaaaaatacaaaaataacctttatac 18059  T

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Target: scaffold0181; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 17311 - 17375
Alignment:
Q  225 gattgctttttaggcctcc-caatatctctttaggccccctaaaaatacaaaattaacttttata 288  Q
    |||||||||||||||| || |||||| ||||||||||||||||||||| |||| |||| ||||||    
T  17311 gattgctttttaggccccctcaatatttctttaggccccctaaaaatataaaaataacctttata 17375  T

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