View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5063_low_13 (Length: 342)
Name: NF5063_low_13
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_low_13 |
 | |
|
| [»] chr8 (14 HSPs) |
| |
|
| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 304; Significance: 1e-171; HSPs: 14)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 11 - 342
Target Start/End: Original strand, 6313400 - 6313731
Alignment:
| Q |
11 |
cacagaaccatgatttagaggtttcgtcggttcgatctccgatctgatttttacaacattgatattaatttgacgggtagaccgataaaatttaatttta |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
6313400 |
cacagaaccatgatttagaggtttcttcggttcgatctccgatctgatttttacaacattgatattaatttgacgggcagaccgataaaatttaatttta |
6313499 |
T |
|
| Q |
111 |
atgtatgcaaaaacagaaaaacctgtatgtggtggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6313500 |
atgtatgcaaaaacagaaaaacctgtatgtggtggaatgaaaaccagacaaattagctgcttgaaaaagagcattcttccaattttgcatcatcttatca |
6313599 |
T |
|
| Q |
211 |
tcatttttgccttgcttcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataa |
310 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6313600 |
tcatttttgccttgtttcttgtgtttaatcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataa |
6313699 |
T |
|
| Q |
311 |
caacatctttgtcatcttcatttttgttacaa |
342 |
Q |
| |
|
||||| | |||||||||||||||||||||||| |
|
|
| T |
6313700 |
caacaaccttgtcatcttcatttttgttacaa |
6313731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 127 - 340
Target Start/End: Complemental strand, 14403567 - 14403354
Alignment:
| Q |
127 |
aaaaacctgtatgtggtggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttgct |
226 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |
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|
| T |
14403567 |
aaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgtcttgct |
14403468 |
T |
|
| Q |
227 |
tcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaacatctttgtcatc |
326 |
Q |
| |
|
| | ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | |||||||| |
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|
| T |
14403467 |
ccatatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcatc |
14403368 |
T |
|
| Q |
327 |
ttcatttttgttac |
340 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14403367 |
ttcatttttgttac |
14403354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 94 - 340
Target Start/End: Complemental strand, 5569026 - 5568784
Alignment:
| Q |
94 |
gataaaatttaattttaatgtatgcaaaaacagaaaaacctgtatgtggtggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaat |
193 |
Q |
| |
|
|||||||| |||||||||||||| |||| || |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5569026 |
gataaaatataattttaatgtatacaaagact-aaaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaat |
5568928 |
T |
|
| Q |
194 |
tttgcatcatcttatcatcatttttgccttgcttcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatg |
293 |
Q |
| |
|
||||||||||||||||||| | || |||| ||||||||| | ||| ||| |||||||||| || |||||||||||||| ||||||||||||||||| |
|
|
| T |
5568927 |
tttgcatcatcttatcatcttggttctcttg---cttgtgtttcgccaatgcactgccataactcccggtctgcttccgcacatgtgaagggtcaacatg |
5568831 |
T |
|
| Q |
294 |
gtagaacactggaataacaacatctttgtcatcttcatttttgttac |
340 |
Q |
| |
|
||||||||| ||||| ||| || ||||| |||||||||||||||| |
|
|
| T |
5568830 |
gtagaacacaggaatcacaccaatgttgtcgtcttcatttttgttac |
5568784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 127 - 339
Target Start/End: Complemental strand, 5547838 - 5547632
Alignment:
| Q |
127 |
aaaaacctgtatgtggtggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttgct |
226 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| | |||||||| | ||||| ||||||||| |||| | |||||||||| |
|
|
| T |
5547838 |
aaaaacctgtatgtggttgaatgaaaaccagacaaattagcagcttcagaaagagcagtattccatttttgcatc------tcatggtcgttgccttgct |
5547745 |
T |
|
| Q |
227 |
tcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaacatctttgtcatc |
326 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||| | |||||||| |
|
|
| T |
5547744 |
tcttgtgtttagccaaggcagtgccataactcccagtttgcttcctcacgtgtgaagggtcaacatggtagaacacaggaataacaacaacgttgtcatc |
5547645 |
T |
|
| Q |
327 |
ttcatttttgtta |
339 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5547644 |
ttcatttttgtta |
5547632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 97 - 340
Target Start/End: Original strand, 5598195 - 5598438
Alignment:
| Q |
97 |
aaaatttaattttaatgtatgcaaaaacagaaaaacctgtatgtggtggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaatttt |
196 |
Q |
| |
|
||||| |||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
5598195 |
aaaatctaattttaattaatgcaaagattaaaaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaatttt |
5598294 |
T |
|
| Q |
197 |
gcatcatcttatcatcatttttgccttgcttcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggta |
296 |
Q |
| |
|
| ||||||||||||||||| |||||||||| | ||||||| | || |||| ||| ||| || || || ||||||||||||||||||||||||||||| |
|
|
| T |
5598295 |
gtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaacatggta |
5598394 |
T |
|
| Q |
297 |
gaacactggaataacaacatctttgtcatcttcatttttgttac |
340 |
Q |
| |
|
|| || ||||| |||||| | |||||||| ||||||||||||| |
|
|
| T |
5598395 |
aaaaacaggaatgacaacaacgttgtcatcctcatttttgttac |
5598438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 97 - 340
Target Start/End: Complemental strand, 5637080 - 5636837
Alignment:
| Q |
97 |
aaaatttaattttaatgtatgcaaaaacagaaaaacctgtatgtggtggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaatttt |
196 |
Q |
| |
|
||||| |||||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
5637080 |
aaaatctaattttaattaatgcaaagattaaaaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaatttt |
5636981 |
T |
|
| Q |
197 |
gcatcatcttatcatcatttttgccttgcttcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggta |
296 |
Q |
| |
|
| ||||||||||||||||| |||||||||| | ||||||| | || |||| ||| ||| || || || ||||||||||||||||||||||||||||| |
|
|
| T |
5636980 |
gtatcatcttatcatcattgttgccttgctccctgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaacatggta |
5636881 |
T |
|
| Q |
297 |
gaacactggaataacaacatctttgtcatcttcatttttgttac |
340 |
Q |
| |
|
|| || ||||| |||||| | |||||||| ||||||||||||| |
|
|
| T |
5636880 |
aaaaacaggaatgacaacaacgttgtcatcctcatttttgttac |
5636837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 125 - 339
Target Start/End: Complemental strand, 5624855 - 5624647
Alignment:
| Q |
125 |
agaaaaacctgtatgtggtggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttg |
224 |
Q |
| |
|
|||||||||||| | ||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||| |||| | |||||||| |
|
|
| T |
5624855 |
agaaaaacctgtttttggctaaatgaaaaccagacaaattagcagcttgaaaaagagcagtattccatttttgcatc------tcatggtcgttgccttg |
5624762 |
T |
|
| Q |
225 |
cttcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaacatctttgtca |
324 |
Q |
| |
|
|| ||||||||||| || |||||||||||||| || ||||| |||||||| |||||||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
5624761 |
ctccttgtgtttagccagagcagtgccataacttccggtctgtttccgcacttgtgaagggtcaacatggtagaacacaggaataacaacaacattgtca |
5624662 |
T |
|
| Q |
325 |
tcttcatttttgtta |
339 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5624661 |
tcttcatttttgtta |
5624647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 131 - 312
Target Start/End: Complemental strand, 32632971 - 32632793
Alignment:
| Q |
131 |
acctgtatgtggtggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttgcttctt |
230 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
32632971 |
acctgtatgtggtagaatgaaaaccggataaattggctgcttgaaaaagagcattcttccaattttgcatcatcttatgatca---cagccttgcttctt |
32632875 |
T |
|
| Q |
231 |
gtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataaca |
312 |
Q |
| |
|
|||||| | |||||||||||| ||||| |||||||| ||||||||| | || ||||||| |||||| ||||| ||||||||| |
|
|
| T |
32632874 |
gtgttttgccaacgcagtgccgtaacttccagtctgtttccgcacgcgggaggggtcaatatggtaaaacacaggaataaca |
32632793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 174 - 337
Target Start/End: Complemental strand, 5573054 - 5572899
Alignment:
| Q |
174 |
aaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttgcttcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgc |
273 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| |||||||||| |||||||||||||||||| | ||| |||||||| ||||| || ||||||||||| |
|
|
| T |
5573054 |
aaaaagagctttcttccaaatttgtatcatcatatcatcatt---gccttgcttcttgtgttttgccaaagcagtgccgtaactccccgtctgcttccgg |
5572958 |
T |
|
| Q |
274 |
acgtgtgaagggtcaacatggtagaacactggaataacaacatctttgtcatcttcatttttgt |
337 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| | ||||| | ||||||||||| |
|
|
| T |
5572957 |
acgtgtgaagggtcaacatggt-----acgggaataacaacaacattgtctttttcatttttgt |
5572899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 128 - 338
Target Start/End: Complemental strand, 13164678 - 13164483
Alignment:
| Q |
128 |
aaaacctgtatgtggtggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttgctt |
227 |
Q |
| |
|
|||||||||||||||| ||||| || ||||| ||||||| |||| ||||||||||||||||||||||||| |||||||| ||| | |
|
|
| T |
13164678 |
aaaacctgtatgtggtagaatggaatccagataaattagatgcttcgaaaagagcattcttccaattttgcaacatcttatggtcaat------------ |
13164591 |
T |
|
| Q |
228 |
cttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaacatctttgtcatct |
327 |
Q |
| |
|
|||||| | ||| |||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||| |||||||||||| | || |||| | |
|
|
| T |
13164590 |
---gtgttttgccaaagcagtgccgtaactgccagtctgcttccgaacatgtgaagggtcaacatggtagaacacaggaataacaacaacgttatcattt |
13164494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 5562569 - 5562471
Alignment:
| Q |
216 |
tttgccttgcttcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaac |
314 |
Q |
| |
|
|||| ||| |||||||||||| | || ||||||||| ||||| || || || ||||| || | ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
5562569 |
tttgtcttccttcttgtgttttgccagcgcagtgccgtaactccctgtgtgtttccgaacatcagaagggtcaacatggtagaacacaggattaacaac |
5562471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 335
Target Start/End: Original strand, 12190344 - 12190463
Alignment:
| Q |
216 |
tttgccttgcttcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaaca |
315 |
Q |
| |
|
||||||||| ||||| ||||| | |||||| ||| ||||| || |||||||| || || |||||||| || | | |||||||||| |||||||||||| |
|
|
| T |
12190344 |
tttgccttgtttcttttgtttcgccaacgccgtgtggtaactccctgtctgctttcggacatgtgaaggttctatacggtagaacacaggaataacaaca |
12190443 |
T |
|
| Q |
316 |
tctttgtcatcttcattttt |
335 |
Q |
| |
|
| ||||| || |||||||| |
|
|
| T |
12190444 |
acgttgtcttcgtcattttt |
12190463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 335
Target Start/End: Original strand, 12434772 - 12434891
Alignment:
| Q |
216 |
tttgccttgcttcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaaca |
315 |
Q |
| |
|
||||||||| ||||| ||||| | |||||| ||| ||||| || |||||||| || || |||||||| || | | |||||||||| |||||||||||| |
|
|
| T |
12434772 |
tttgccttgtttcttttgtttcgccaacgccgtgtggtaactccctgtctgctttcggacatgtgaaggttctatacggtagaacacaggaataacaaca |
12434871 |
T |
|
| Q |
316 |
tctttgtcatcttcattttt |
335 |
Q |
| |
|
| ||||| || |||||||| |
|
|
| T |
12434872 |
acgttgtcttcgtcattttt |
12434891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 5562656 - 5562606
Alignment:
| Q |
147 |
atgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttg |
197 |
Q |
| |
|
|||||| ||||| |||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
5562656 |
atgaaatccagataaattagctgcttcaaaaagagcattcttccatttttg |
5562606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 127 - 340
Target Start/End: Original strand, 15286 - 15499
Alignment:
| Q |
127 |
aaaaacctgtatgtggtggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttgct |
226 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
15286 |
aaaaacctgtatgttgcagaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgttgtcttgct |
15385 |
T |
|
| Q |
227 |
tcttgtgtttagtcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaacatctttgtcatc |
326 |
Q |
| |
|
| | ||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| | |||||||| |
|
|
| T |
15386 |
ccatatgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcatc |
15485 |
T |
|
| Q |
327 |
ttcatttttgttac |
340 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
15486 |
ttcatttttgttac |
15499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 19495905 - 19495980
Alignment:
| Q |
240 |
caacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaaca |
315 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| || | |||||| |||| | |||||||||| |||| ||||||| |
|
|
| T |
19495905 |
caacgcagcgccataactcccagtctgcttccgaacatatgaaggttcaatacggtagaacacaggaagaacaaca |
19495980 |
T |
|
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