View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_low_14 (Length: 330)
Name: NF5063_low_14
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 26535766 - 26536039
Alignment:
| Q |
1 |
cagagaaacatcaaaatatcatgagagtacacagagaacaagaagtacttcaagataaaagaacataaaaacaataagcgaaactagaaataacaagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26535766 |
cagagaaacatcaaaatatcatgagagtacacagagaacaagaagtacttcaagataaaagaacataaaaacaataagcgaaactagaaataacaagaaa |
26535865 |
T |
|
| Q |
101 |
aatacaacagagggagcattcccaagtcccaactagaagaaaaaccctaaaccagccacggtaagaaaactcaaaaaatgctacactactatgagaaagg |
200 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26535866 |
aatacaacagagggagc-------actcccaactagaagaaaaaccctaaaccagccacggtaagaaaactcaaaaaatgctacactactatgagaaagg |
26535958 |
T |
|
| Q |
201 |
agaaggaactagtagttggcc-nnnnnnnntctatagacacctcc-aaaaaaccaaatatttttatatgcaccctcaccat |
279 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||| ||||| |||||| |
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| T |
26535959 |
agaaggaactagtagttggccaaaaaaaaatctatatacacctccaaaaaaaccaaatatttttatatacacccccaccat |
26536039 |
T |
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