View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_low_17 (Length: 297)
Name: NF5063_low_17
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 37 - 288
Target Start/End: Complemental strand, 3895519 - 3895268
Alignment:
| Q |
37 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
136 |
Q |
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| T |
3895519 |
ctttccaacaacagtctccttgatcttttgtgttgcatccttcgctgtctcccacgctccttgggccgtcttcttcgccatttccccagcactcttcaaa |
3895420 |
T |
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| Q |
137 |
gcctctgtcgccgacccagcaacctcccccgtcttctctgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895419 |
gcctctgtcgccgacccagcaacctcccccgtcttctccgccgttttctcagctccttcttttgtcttatcagccatgtaactcgctccttccttggttc |
3895320 |
T |
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| Q |
237 |
tttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3895319 |
tttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
3895268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 3895197 - 3895139
Alignment:
| Q |
227 |
tccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctc |
285 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
3895197 |
tcctttgttctctcctttgcatcataagcataatctctagccttctctccagcattctc |
3895139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 3895079 - 3895016
Alignment:
| Q |
225 |
cttccttggttctttcctttgcatcataagcataatctctagctttctccccagcactctctgc |
288 |
Q |
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|||| |||||||| || ||| | ||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
3895079 |
cttcattggttctgtcttttacctcataagcatagtctctagctttctctccagcattctctgc |
3895016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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