View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_low_19 (Length: 278)
Name: NF5063_low_19
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 1396046 - 1396257
Alignment:
| Q |
19 |
atgtgataatcataagaaatacatttttgtcccatagaaatacatattctattgatcacataaaaacacacaaattttgtcatagtcataaagaaatgca |
118 |
Q |
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| T |
1396046 |
atgtgataatcataagaaatacatttttgtcccatagaaatacatattctattgatcacataaaaacacacaaattttgtcatagtcataaagaaatgca |
1396145 |
T |
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| Q |
119 |
tattctattgatccaataaaaacacacaagttttgctgcataactaaattttcatctcaatgagccagtaacaatttggtaatttgtttcactttataat |
218 |
Q |
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| T |
1396146 |
tattctattaatccaataaaaacacacaagttttgctgcataactaaattttcatctcaatgagccagtaacaatttggtaatttgtttcactttataat |
1396245 |
T |
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| Q |
219 |
tgataattaaga |
230 |
Q |
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|||||||||||| |
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| T |
1396246 |
tgataattaaga |
1396257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 54 - 230
Target Start/End: Original strand, 1390790 - 1390964
Alignment:
| Q |
54 |
agaaatacatattctattgatcacataaaaacacacaaattttgtcatagtcataaagaaatgcatattctattgatccaataaaaacacacaagttttg |
153 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||||||||| || |||||||||||||||||||| |
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| T |
1390790 |
agaagtacatattctattgatcacataaaaactcacaaattttgtcatagtcataaaaatatg--tattctattgaacccataaaaacacacaagttttg |
1390887 |
T |
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| Q |
154 |
ctgcataactaaattttcatctcaatgagccagtaacaatttggtaatttgtttcactttataattgataattaaga |
230 |
Q |
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| T |
1390888 |
ctgcatagctaaattttcatcttaatgagctggtaacaatttggtaatttgtgtcactgtatagttgataactaaga |
1390964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 1363519 - 1363561
Alignment:
| Q |
56 |
aaatacatattctattgatcacataaaaacacacaaattttgt |
98 |
Q |
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| T |
1363519 |
aaatacatattttattgatcacataaaaacacaataattttgt |
1363561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 1363612 - 1363648
Alignment:
| Q |
120 |
attctattgatccaataaaaacacacaagttttgctg |
156 |
Q |
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| T |
1363612 |
attctatcgatcccataaaaacacacaagttttgctg |
1363648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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