View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_low_23 (Length: 255)
Name: NF5063_low_23
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 3808012 - 3807771
Alignment:
| Q |
7 |
ttgttgaagtgttccttgcacatggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgcaactttttatccttcatgcattt |
106 |
Q |
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| T |
3808012 |
ttgttgaagggtacctttcacatggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgcaactttttatccttcatgcattt |
3807913 |
T |
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| Q |
107 |
tttggctgccatgcataagattttgattaacttgctcattctccctacttctccaacaaacacttcaggtaccttcttaaccaagttgttgtattcatca |
206 |
Q |
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| T |
3807912 |
tttggctgccatgcataagattttgattaacttgctcattctccctacttctccaacaaacacttcaggtaccttcttaaccaagttgttgtattcatca |
3807813 |
T |
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| Q |
207 |
cttccttttgccatctcaaactcagcttggaagttcatctca |
248 |
Q |
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| T |
3807812 |
cttccttttgccatctcaaactcagcttggaagttcatctca |
3807771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 3776312 - 3776065
Alignment:
| Q |
1 |
gaggagttgttgaagtgttccttgcacatggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgcaactttttatccttcat |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |||| |||||||||||||| |
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| T |
3776312 |
gaggagttgttgaagtgttcctttcacatggacctaaccatttagcttgcatgtacctatgcttcctccatggccccatgtgcatttttttatccttcat |
3776213 |
T |
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| Q |
101 |
gcattttttggctgccatgcataagattttgattaacttgctcattctccctacttctccaacaaacacttcaggtaccttcttaaccaagttgttgtat |
200 |
Q |
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| T |
3776212 |
gcattttttggctgcattgcataatattttgattaggtttcccaatctctctactttccctacaaacacttcaggcagcttctggacaagtttgttgtat |
3776113 |
T |
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| Q |
201 |
tcatcacttccttttgccatctcaaactcagcttggaagttcatctca |
248 |
Q |
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| T |
3776112 |
tcatcacttccccttgccatctcaaactcagcttggaaattcagctca |
3776065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 35365011 - 35365088
Alignment:
| Q |
7 |
ttgttgaagtgttccttgcacatggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgca |
84 |
Q |
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||||||||||||||||| | ||||||||||||||||||||| |||||| ||||| | |||||||| |||||||||| |
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| T |
35365011 |
ttgttgaagtgttccttttaaatggacctaaccatttagcttgcatgtatttatgttttctccatggtcccatatgca |
35365088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 35373127 - 35373204
Alignment:
| Q |
7 |
ttgttgaagtgttccttgcacatggacctaaccatttagcttccatgtacttatgcctcctccatggccccatatgca |
84 |
Q |
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||||||||||||||||| | ||||||||||||||||||||| |||||| ||||| | |||||||| ||||| |||| |
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| T |
35373127 |
ttgttgaagtgttccttttaaatggacctaaccatttagcttgcatgtatttatgttttctccatggtcccatgtgca |
35373204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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