View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5063_low_27 (Length: 248)

Name: NF5063_low_27
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5063_low_27
NF5063_low_27
[»] chr1 (7 HSPs)
chr1 (197-239)||(42306248-42306290)
chr1 (197-237)||(42306296-42306336)
chr1 (198-237)||(42306348-42306387)
chr1 (197-237)||(42305960-42306000)
chr1 (198-237)||(42306057-42306096)
chr1 (197-237)||(42306005-42306045)
chr1 (197-237)||(42306392-42306432)


Alignment Details
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 42306248 - 42306290
Alignment:
Q  197 taccctaaaccagtctaccactctcctccacccccagttcatc 239  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42306248 taccctaaaccagtctaccactctcctccacccccagttcatc 42306290  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 42306296 - 42306336
Alignment:
Q  197 taccctaaaccagtctaccactctcctccacccccagttca 237  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  42306296 taccctaaaccagtctaccactctcctccacccccagttca 42306336  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 42306348 - 42306387
Alignment:
Q  198 accctaaaccagtctaccactctcctccacccccagttca 237  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  42306348 accctaaaccagtctaccactctccaccacccccagttca 42306387  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 42305960 - 42306000
Alignment:
Q  197 taccctaaaccagtctaccactctcctccacccccagttca 237  Q
    |||||||||||||||||||||||||| ||||| ||||||||    
T  42305960 taccctaaaccagtctaccactctccaccaccaccagttca 42306000  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 237
Target Start/End: Original strand, 42306057 - 42306096
Alignment:
Q  198 accctaaaccagtctaccactctcctccacccccagttca 237  Q
    ||||||||||||| ||||||||||| ||||||||||||||    
T  42306057 accctaaaccagtataccactctccaccacccccagttca 42306096  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 42306005 - 42306045
Alignment:
Q  197 taccctaaaccagtctaccactctcctccacccccagttca 237  Q
    |||||||||||||| ||||||||||| ||||| ||||||||    
T  42306005 taccctaaaccagtttaccactctccaccaccaccagttca 42306045  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 42306392 - 42306432
Alignment:
Q  197 taccctaaaccagtctaccactctcctccacccccagttca 237  Q
    ||||||||||||||||||||||| || ||||| ||||||||    
T  42306392 taccctaaaccagtctaccactccccaccaccaccagttca 42306432  T

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