View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_low_28 (Length: 246)
Name: NF5063_low_28
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 229
Target Start/End: Original strand, 36865493 - 36865706
Alignment:
| Q |
16 |
tcattaaaaacatagctcttagtacacttatttactacagacatgggcctaaagaggagtaagatcatcttgtaaaacattttcagaaagaaacttactt |
115 |
Q |
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| T |
36865493 |
tcattaaaaacatagctcttagtacacttatttactacagacatgggcctaaagaggagtaagatcatcttgtaaaacattttcagaaagaaacttactt |
36865592 |
T |
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| Q |
116 |
ggaataagaaggtattgcttattgttggcttctacttctggatgtatctctctaggttactctggtggtaatgcagtctctagaataaagaaggaatagc |
215 |
Q |
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| T |
36865593 |
gaaataagaaggtattgcttattgttggcttctacttctggatgtatctgtctaggttactctggtggtaatgcagtctctagaataaagaaggaatagc |
36865692 |
T |
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| Q |
216 |
tgggtgatactagt |
229 |
Q |
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|||||||||||||| |
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| T |
36865693 |
tgggtgatactagt |
36865706 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 42204462 - 42204412
Alignment:
| Q |
66 |
aaagaggagtaagatcatcttgtaaaacattttca-gaaagaaacttactt |
115 |
Q |
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||||||||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
42204462 |
aaagaggagcatgatcatcttgtaaaacattttcataaaagaaacttactt |
42204412 |
T |
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