View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_low_30 (Length: 244)
Name: NF5063_low_30
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 36704311 - 36704084
Alignment:
| Q |
1 |
ttatattgtacttcaaataatgtattgtagcatataggagtagttttttcatttagttgagattcattcgagtgnnnnnnnnctcaactgagtatgttag |
100 |
Q |
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| T |
36704311 |
ttatattgtactacaaataatgtattgtagtatataggagtagttttttcatttagttgagattcattcgagtgttttttttctcaactgagtatgttag |
36704212 |
T |
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| Q |
101 |
atttccatcaaaattaaaataaaaagaatatagactgtgttattcttctccatatttaatcacaaaagttgtcttgttttttcaacttagatagatcggt |
200 |
Q |
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| T |
36704211 |
atttccatcaaaattaaaataaaaagaatatagactgtgttattcttctccatatttaatcacaaaagttgtcttgttttttcaacttagatatatcggt |
36704112 |
T |
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| Q |
201 |
tgaatttctccatttttcactaacctca |
228 |
Q |
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| T |
36704111 |
cgaatttctccatttttcactaacctca |
36704084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 36711398 - 36711358
Alignment:
| Q |
89 |
tgagtatgttagatttccatcaaaattaaaataaaaagaat |
129 |
Q |
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| T |
36711398 |
tgagtatgttagatttccgtcaaaattaaaacaaaaagaat |
36711358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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