View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5063_low_5 (Length: 478)
Name: NF5063_low_5
Description: NF5063
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5063_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 3686930 - 3686712
Alignment:
| Q |
1 |
ttgaagctgttccaattcataagttgattttcacaagagtatgtgatgtatttgggcatttattgagaaatccattgcaattgtatataatatagatcaa |
100 |
Q |
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| T |
3686930 |
ttgaagctgttccaattca-aagttgattttcacaagagtatgtgatgtatttgcgcatttattgagaaatccattgcaattgtatataatatagatcaa |
3686832 |
T |
|
| Q |
101 |
gatagataacaatccttaaactaagttacatgttgcacaaaaattctcagtatactgtataatcaaatcaaagatcattaaacaggcatcttcctcaaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3686831 |
gatagataacaatccttaaactaagttacatgttgcaaaaaatttctcagtatactgtataatcaaatcaaagatcgttaaacaggcatcttcctcaaaa |
3686732 |
T |
|
| Q |
201 |
gttgcccttgcatgaagctg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
3686731 |
gttgcccttgcatgaagctg |
3686712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 471
Target Start/End: Complemental strand, 3686650 - 3686441
Alignment:
| Q |
282 |
ttcattttggtagaaacaccctttacacttttcaacacaacnnnnnnnattaactactac---caagatatctaatagggctagtcaaaaaataagaata |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
3686650 |
ttcattttggtagaaacaccctttacacttttcaacact-ccttttttattaactactactaccaagatatctaatagggctagtcaaaaaataaggata |
3686552 |
T |
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| Q |
379 |
cca------------------cgttaggtgatatatattctttaacatcgatacataattatgacatgcaacaaaaacagtaaaactcatctaaaaagag |
460 |
Q |
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| T |
3686551 |
ccaacccttacacgtgaaccaccttaggtgacatacaccctttaacattgatatacaattatgacatgcgacaaaaacagtgaaactcatcaaaaaagag |
3686452 |
T |
|
| Q |
461 |
gatgatgatgt |
471 |
Q |
| |
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||||||||||| |
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| T |
3686451 |
gatgatgatgt |
3686441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 3679990 - 3679941
Alignment:
| Q |
171 |
aagatcattaaacaggcatcttcctcaaaagttgcccttgcatgaagctg |
220 |
Q |
| |
|
||||| ||||||||||||||||| ||||||| |||||||||||||||||| |
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|
| T |
3679990 |
aagataattaaacaggcatcttcttcaaaagctgcccttgcatgaagctg |
3679941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 3664615 - 3664568
Alignment:
| Q |
173 |
gatcattaaacaggcatcttcctcaaaagttgcccttgcatgaagctg |
220 |
Q |
| |
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|||| ||||||||||||||| |||||||||| |||||||||||||||| |
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|
| T |
3664615 |
gatccttaaacaggcatctttctcaaaagtttcccttgcatgaagctg |
3664568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 220
Target Start/End: Complemental strand, 3671857 - 3671810
Alignment:
| Q |
173 |
gatcattaaacaggcatcttcctcaaaagttgcccttgcatgaagctg |
220 |
Q |
| |
|
|||||||||||||||||||| |||||| || |||||||||||||||| |
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|
| T |
3671857 |
gatcattaaacaggcatctttttcaaaattttcccttgcatgaagctg |
3671810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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