View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5064-Insertion-1 (Length: 1160)
Name: NF5064-Insertion-1
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Original strand, 30518534 - 30519009
Alignment:
| Q |
8 |
ttctgcttcaggatctgtgcaaataaaaaagatcaataatgtttcttttatctaataaaaagttaattagctttgaatatacctattgatatattcaatc |
107 |
Q |
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| T |
30518534 |
ttctgcttcaggatctgtgcaaataaaaaagatcaataatgtttcttttatctaataaaaagttaattagctttgaatatacctattgatatattcaatc |
30518633 |
T |
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| Q |
108 |
ataaaggtgaagagagagttataaagggaagaaaaagagagaaaattaacatgcctggatttcctggaaggtttctttttctcttcaaagcaggaggatt |
207 |
Q |
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| T |
30518634 |
ataaaggtgaagagagagttataaagggaagaaaaagagagaaaattaacatgcctggatttcctggaaggtttctttttctcttcaaagcaggaggatt |
30518733 |
T |
|
| Q |
208 |
attagaagcactcattgttggattttgagggaaattagcatttgtgttttctacttcatccatatttttgagcatcttaaatttgtttgactcaaacata |
307 |
Q |
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| T |
30518734 |
attagaagcactcattgttggattttgagggaaattagcatttgtgatttctacttcatccatattttttagcatcttaaatttgtttgactcaaacata |
30518833 |
T |
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| Q |
308 |
gaataagaaacttacaaagagtttagtagtgtgtgtttgatgaaaaactagtgattgttggattgagagaaaaacttataataggcttagagaatatggg |
407 |
Q |
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| T |
30518834 |
gaataagaaacttacaaagagtttagtagtgtgtgtttgatgaaaaactagtgattgttggattaagagaaaaacttataataggcttagagaatatggg |
30518933 |
T |
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| Q |
408 |
aagctaggtttgttgattatatatatggctttaaccctaaacaacaggaagtgatattgtatgcaacaagatggga |
483 |
Q |
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| T |
30518934 |
aagctaggtttgttgattatatatatggctttaaccctaaacaacaggaagtgatattgtatgcaacaagatggga |
30519009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 2e-77
Query Start/End: Original strand, 827 - 1084
Target Start/End: Original strand, 30519341 - 30519598
Alignment:
| Q |
827 |
actaaatagtaaggaactacactatacatatatatgtctttcaaatggtatacattgcagcttatatatgtttgtatactatttctatttctattttggt |
926 |
Q |
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| T |
30519341 |
actaaatagtaaggaactacactatacatatatatgtctttcaaatg-tatacattgcagcttat----gtttgtatactatttctatttctattttggt |
30519435 |
T |
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| Q |
927 |
aaggtgtcttcaatcttttatcttacttcctagaattttgtttcacagcagttttctttggtgtgtgtgtaaccatatcaacca--gaaaagttgcct-a |
1023 |
Q |
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| T |
30519436 |
aaggtgtcttcaatcttttatcttacttcctagatttttgtttcacagcagttttctttg--gtgtgtgtaaccatatgaaccaagaaaaagttgcataa |
30519533 |
T |
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| Q |
1024 |
aataggcccta--ttggatgatcactatccaaattt--aaatggagttgcaacggagattcttga |
1084 |
Q |
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| T |
30519534 |
aataggcactaatttgaatgatcactatcaaaattttaaattgcagttgcaaccgagattcttga |
30519598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 654 - 745
Target Start/End: Original strand, 30519171 - 30519262
Alignment:
| Q |
654 |
tgaagaagcaaaggtgtatgatgacacatatgatgaggttggaagaaagttgatctccatttggaatgattatcccataatttgttcttgct |
745 |
Q |
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| T |
30519171 |
tgaagaagcaaaggtgtatgatgacacatatgatgaggttggaagaaagttgatctccatttggaatgattatcccataatttgttcttgct |
30519262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 509 - 600
Target Start/End: Original strand, 30519026 - 30519118
Alignment:
| Q |
509 |
catatgaatgttattttatatttgatttaattatctacttttgatgtggaat-nnnnnnntggaagatgctgtgggaggcggtgaaaagttaa |
600 |
Q |
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| T |
30519026 |
catatgaatgttattttatatttgatttaattatctacttttgatgtggaataaaaaaaatggaagatgctgtgtgaggcggtgaaaagttaa |
30519118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 656 - 739
Target Start/End: Original strand, 38897067 - 38897153
Alignment:
| Q |
656 |
aagaagcaaaggtgtatgatgacacatatgatgaggtt----ggaagaaagttgatctccatttggaatgattatcccataatttgtt |
739 |
Q |
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|||| ||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
38897067 |
aagaggcaaaggtgtatgatgacacatatgatgaggttgatagcaagaaagttg-catccatttggaatgattatctcataatttgtt |
38897153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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