View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5064-Insertion-2 (Length: 900)
Name: NF5064-Insertion-2
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064-Insertion-2 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 718; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 718; E-Value: 0
Query Start/End: Original strand, 8 - 887
Target Start/End: Complemental strand, 1762604 - 1761718
Alignment:
| Q |
8 |
ctcatatccagcaaagaatatatttttgcaattatctatcatgaatctttctcttgaggtggcgtttggtaagaaactgtcaccatcactctcacatttc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762604 |
ctcatatccagcaaagaatatatttttgcaattatctatcatgaatctttctcttgaagtggcgtttggtaagaaactgtcaccatcactctcacatttc |
1762505 |
T |
|
| Q |
108 |
tttgcactatcaagtatcatttgcaagagatcttgttcatcatgagcatcaatttggcgnnnnnnnatcagctttgatatctttgagcttatctctttct |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
1762504 |
tttgcactatcaagtatcatttgcaagagatcttgttcatcatgagcatcaatttggcgttgttttatcagctttgatatctttgaacttatctctttct |
1762405 |
T |
|
| Q |
208 |
ctaatctccacatttgtctattgcttttgtttggcaaatatctaaaaccaaattatgattccattttcaacattagtatcatcactaacaataatagtag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762404 |
ctaatctccacatttgtctattgcttttgtttggcaaatatctaaaaccaaattatgattccattttcaacattagtatcatcactaacaataatagtag |
1762305 |
T |
|
| Q |
308 |
agaacataatattatatatgaaataaattaacctcgtatcataatatgataaagattaaacatacctaaagcctggaattccagcaaaaattttgcaaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762304 |
agaacataatattatatatgaaataaattaacctcgtatcataatatgataaagattaaacatacctaaagcctggaattccagcaaaaattttgcaaat |
1762205 |
T |
|
| Q |
408 |
gatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762204 |
gatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctc |
1762105 |
T |
|
| Q |
508 |
aagtcttggtcaactttaatctctgaaactccatctttttccaatttcgtctcccatgatcttagcattatattcgtggagtcgactatcataccgacct |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762104 |
aagtcttggtcaactttaatctctgaaactccatctttttccaatttcgtctcccatgatcttagcattatattcgtggagtcgactatcataccgacct |
1762005 |
T |
|
| Q |
608 |
ttgtcttcaacgtgattnnnnnnnnnnncattgttattcaaaatcaacatttacaagcaattgtatgtaaaaacaacatctttactattgcatatacatg |
707 |
Q |
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| T |
1762004 |
ttgtcttcaacgtgattaaaataaaaaacattgttattcaaaatcaacatttacaagcaattgtatgtaaaaacaacatctttactattgcatatacatg |
1761905 |
T |
|
| Q |
708 |
cctatcattgtaaaatagtttccaatgtcaaaaatactccaacatattaac---------nnnnnnnnnnatttaaatatgcttttaagtccttacaaat |
798 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
1761904 |
cctatcattgtaaaatagtttccaatgtcaaaaatactccaacatattaactctttttttttttttatttatttaaatgtgcttttaagtccttacaaat |
1761805 |
T |
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| Q |
799 |
atggctattttgtgcttttaattaagtccttaaaaatatatttctagtccttgcggtgt-atatcactttttgctttaagtggatccttg |
887 |
Q |
| |
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| T |
1761804 |
at-gctattttatgcttttaatt-agtccttaaaaatatatttctagtccttgc-gtgtaatatcactttttgctttaagttggtccttg |
1761718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 421 - 596
Target Start/End: Complemental strand, 25196765 - 25196587
Alignment:
| Q |
421 |
tctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaa |
520 |
Q |
| |
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||||||||||||| || |||||| |||||||||||||||||||||||||||| |||| |||||||||||| | || ||| ||| ||| |||| |||| |
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| T |
25196765 |
tctctaagctttgcgaatatttcttttccttcaacataattgctcccaaaacacactctagcaattatgtcagccgacaagcttcgcaaatcttcatcaa |
25196666 |
T |
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| Q |
521 |
ctttaatctctgaa---actccatctttttccaatttcgtctcccatgatcttagcattatattcgtggagtcgactat |
596 |
Q |
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|| ||||||||||| || |||||| ||| | ||| |||||||| ||||||| ||||||||| |||||||| ||||| |
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| T |
25196665 |
ctgtaatctctgaaatcaccccatctccttctattttagtctcccaagatcttaccattatatttgtggagtcaactat |
25196587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 25197050 - 25196942
Alignment:
| Q |
189 |
tttgagcttatctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaaaccaaattatgattccattttcaacattagtatca |
288 |
Q |
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|||||| ||||||||||||| | |||||| |||||| |||| || ||||||||||| || || ||| | |||||||| |||||| | ||||||||| || |
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| T |
25197050 |
tttgagtttatctctttctccagtctccatatttgtatatttctcttgtttggcaagtacct-aaataagattatgataccatttcccacattagtacca |
25196952 |
T |
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| Q |
289 |
tcactaacaa |
298 |
Q |
| |
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| |||||||| |
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| T |
25196951 |
ttactaacaa |
25196942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 98 - 298
Target Start/End: Complemental strand, 19207536 - 19207340
Alignment:
| Q |
98 |
ctcacatttctttgcactatcaagtatcatttgcaagagatcttgttcatcatgagcatcaatttggcgnnnnnnnatcagctttgatatctttgagctt |
197 |
Q |
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| T |
19207536 |
ctcacaattttttgcaccctcaagtatcatttgcaagagatcttgt---tcatgaccttcctcttggcgttgttttacgagcttggatatatttgagttt |
19207440 |
T |
|
| Q |
198 |
atctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaaaccaaattatgattccattttcaacattagtatcatcactaaca |
297 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||| || ||||||||| || || ||| | |||||||| ||||||||||||||| ||||| |
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| T |
19207439 |
atctctttctctaatctccatatctgtctattgcttttgtttggtaagtatctaaaa-catatcatggtaccattttccacattagtatcatcattaaca |
19207341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 368 - 537
Target Start/End: Complemental strand, 19207257 - 19207088
Alignment:
| Q |
368 |
catacctaaagcctggaattccagcaaaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctccc |
467 |
Q |
| |
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||||||||||||| ||||||||| || | || ||| | | || ||| ||| ||||||||||||| || |||||| ||||||| |||||||||||||| |
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| T |
19207257 |
catacctaaagcccggaattccaacatatatcttggagaggagttttataagatctctaagctttgtgaatatttcttttccttcgacataattgctccc |
19207158 |
T |
|
| Q |
468 |
aaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactttaatctctgaaact |
537 |
Q |
| |
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||||| | |||| |||||||||||| |||| ||| ||| || |||| ||||||||||||||||||||| |
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| T |
19207157 |
aaaactaactctagcaattatgtcagctgacaagcttcgcagatcttcatcaactttaatctctgaaact |
19207088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 50; Significance: 4e-19; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 424 - 596
Target Start/End: Complemental strand, 9527 - 9352
Alignment:
| Q |
424 |
ctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactt |
523 |
Q |
| |
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|||||||||| || |||||| |||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||| ||| || |||| ||||| || |
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| T |
9527 |
ctaagctttgtgaatatttcttttcctttgacataattgctcccaaaacaaactctagcaattatgtcagctgacaagcttcgcagatcttcgtcaattt |
9428 |
T |
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| Q |
524 |
taatctctgaa---actccatctttttccaatttcgtctcccatgatcttagcattatattcgtggagtcgactat |
596 |
Q |
| |
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| ||||||||| |||||||| |||| | | | ||||||| |||||||||||||||| |||||||| ||||| |
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| T |
9427 |
ttatctctgaaactactccatcactttcaattctactctcccaagatcttagcattatatctgtggagtcaactat |
9352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 177 - 255
Target Start/End: Complemental strand, 9766 - 9688
Alignment:
| Q |
177 |
agctttgatatctttgagcttatctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaaac |
255 |
Q |
| |
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||||||||||| |||||| | ||||||| ||| |||||||| || ||||||||||||||||||||||| |||||||||| |
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| T |
9766 |
agctttgatatatttgagttaatctcttcctccaatctccatatctgtctattgcttttgtttggcaagtatctaaaac |
9688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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