View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5064_high_11 (Length: 241)
Name: NF5064_high_11
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 47064473 - 47064251
Alignment:
| Q |
1 |
ccgatttgcttccatcccatcttgattagacttttacctctttttgggagacgcagaagaacaaaaaattaatcttaagtctttgcatcataacaaatta |
100 |
Q |
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| T |
47064473 |
ccgattttcttccatcccatcttgattagacttttacctctttttgggagacgcagaagaacaaaaaattaatctcaagtctttgcatcataacaaatta |
47064374 |
T |
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| Q |
101 |
acaaagccaacatacctaatgattagtaacaatgcttggcacatctatattcaagaagcacttttgagtaatctttggttctttacatcaaacagtaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47064373 |
acaaagccaacatacctaatgattagtaacaatgcttggcacatctatattcaagaagcacttttgagtaatctttggttctttacatcaaacagtaaag |
47064274 |
T |
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| Q |
201 |
cacttatgataggtatgcatgct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
47064273 |
cacttatgataggtatgcatgct |
47064251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 47055151 - 47055060
Alignment:
| Q |
133 |
tgcttggcacatctatattcaagaagcacttttgagta-atctttggttctttacatcaaacagtaaagcacttatgataggtatgcatgct |
223 |
Q |
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||||||| |||||||||||||| ||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
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| T |
47055151 |
tgcttggaacatctatattcaaaaagcacttttgaggatatctttggttctttatatcaaccagtaaagcacttatgataggtaagcatgct |
47055060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 47055330 - 47055268
Alignment:
| Q |
42 |
ttttgggagacgcagaagaacaaaaaattaatcttaagtctttgcatcataacaaattaacaa |
104 |
Q |
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||||||||||| || |||||||| | ||||||| ||| ||||| |||||||||||||||||| |
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| T |
47055330 |
ttttgggagacacaaaagaacaacagattaatcataaacctttgaatcataacaaattaacaa |
47055268 |
T |
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