View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5064_high_2 (Length: 454)
Name: NF5064_high_2
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 33855216 - 33854777
Alignment:
| Q |
16 |
taaactaatatttttgtatgcacatgccttgaatcattagtttgttgatgattgaacaaga----------acatttataatgactattttaatgactct |
105 |
Q |
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| T |
33855216 |
taaactaatatttttgtatgcacatgccttgaatcattagtttgttgatgattgaacaagagtagacactaacattaataatgactattttaatgactgt |
33855117 |
T |
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| Q |
106 |
ttatttcctagatgattgaagtgggtaaataattcttgaagaacccagaatgtaatagcttagtcatactatcataaagcacattgttaaatctattaaa |
205 |
Q |
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| T |
33855116 |
taatttcctagatgattgaagtgggtaaataattcttgaagaacccagaatgtaatagcttagtcatactatcataaagcacattgttaaatctatt-ga |
33855018 |
T |
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| Q |
206 |
attttgatcttatgagctttgatcattatcagtgnnnnnnnnnnnnnnnnnnnnngtgatttaggaaaagaagaaatctcgttcaagatcaaataggtaa |
305 |
Q |
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| T |
33855017 |
attttgatcttatgagctttg---attatcagtgtttaattttttattttattttgtgatttaggaaaagaagaaatctcgttcaagatcaaataggtaa |
33854921 |
T |
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| Q |
306 |
gtttttaattgtgagagttattctttgacattattgagatatcagcaaatacacgt-----------tgtttaatgactgtttttatgcgtaacagtgat |
394 |
Q |
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| T |
33854920 |
gtttttaattgt--gagttattctttgacattattgagatatcagcaaatacacgttgttttgttcgtgtttaat-actgtttttatgcgtaacagtgat |
33854824 |
T |
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| Q |
395 |
gaagaggaagttattctagctagatgtcactatacagaggcacaggt |
441 |
Q |
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| T |
33854823 |
gaagaggaagttattctagctagatgtcactatacagaggcacaggt |
33854777 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 435
Target Start/End: Original strand, 28214211 - 28214257
Alignment:
| Q |
389 |
agtgatgaagaggaagttattctagctagatgtcactatacagaggc |
435 |
Q |
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| T |
28214211 |
agtgatgaagatgaagttcttcaagctagatgtcactatacagaggc |
28214257 |
T |
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