View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5064_high_4 (Length: 439)
Name: NF5064_high_4
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 418
Target Start/End: Complemental strand, 54958460 - 54958056
Alignment:
| Q |
17 |
atacctaaccaagaagaagtgtgaaaagatgttggtcctgaaaactctttcaagctgttgttcagtgatttcctctattgagtttttgaggtgttgttca |
116 |
Q |
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| T |
54958460 |
atacctgaccaagaagaagtgtgaaaagatgttggtcctgaaaactctttcaagctgttgttcagtgatttcctctattgagtttctgaggtgttgttca |
54958361 |
T |
|
| Q |
117 |
gctgcattgttgacaagaacatcaatgcg---tccatactctttgacaacaagttccacaacctgtttgcaattctcatcatatccaatatcagctgcaa |
213 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
54958360 |
gctgcattgttgacaagaacatcaatgctgcttccatattcttttacaacaagttccacaacctgtttacaattctcatcatatccaatatcagcagcaa |
54958261 |
T |
|
| Q |
214 |
tagctaatggttcttgtgcatcatttgtcttggcttctagcaacatcttcagagtatcatccttatccctatcctcaacacctttcacgtatgtaaaggc |
313 |
Q |
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| T |
54958260 |
ttgctaatggttcttgtgcatcacttgtcttggcttctagcaacatcttcagagtatcatccttgtccctatcctcaacacctttcacgtatgtaaaggc |
54958161 |
T |
|
| Q |
314 |
cactgttgcaccctcttttgcaaatattagacacactgctcttcctatacctgagtcacctcctgtcaccaacgccacctttccctgtacaaatgacaac |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54958160 |
cactgttgcaccctcttttgcaaatattagacacactgctcttcctatacctgagtcacctcctgtcaccaacgccacctttccctgtacaaatgacaat |
54958061 |
T |
|
| Q |
414 |
aacaa |
418 |
Q |
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| T |
54958060 |
aacaa |
54958056 |
T |
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