View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5064_high_5 (Length: 322)
Name: NF5064_high_5
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 44958483 - 44958789
Alignment:
| Q |
1 |
agcaaggacctcatttgtttctcgtattccagtgagggcaaagcttgatgtggtttaataagatgttagtggaccatttgatacattttcattgtgaggg |
100 |
Q |
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| T |
44958483 |
agcaaggaactcatttgtttctcatattccaatgagggcaaagcttgatgtggtttaataagatgttagtggaccatttgatacattttcattgtgaggg |
44958582 |
T |
|
| Q |
101 |
aataggtacattgtctcatttatgggtgaatacagtacaattacgtaggtttacctaatcaagactaaagatgaagtgtttcatgtcttcaataagttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44958583 |
aataggtacattgtctcatttatgggtgaatacagtacaattacgtaggtttacctaatcaagactagagatgaagtgtttcatgtcttcaataagttca |
44958682 |
T |
|
| Q |
201 |
aagtattagttgaaaaagaagcagacaggtaaatatgcttagaagtgatgaaggatgagaatatacatctaaatagttggagaatttctttgatgagatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
44958683 |
aagtattagttgaaaaagaagcagacaggtaaatatgcttagaagtgatgaaggatgagaatatacatctaaatagttagagaatttttttgatgagatg |
44958782 |
T |
|
| Q |
301 |
ggaattc |
307 |
Q |
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||||||| |
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| T |
44958783 |
ggaattc |
44958789 |
T |
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