View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5064_high_7 (Length: 256)
Name: NF5064_high_7
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43612712 - 43612953
Alignment:
| Q |
1 |
taattattttgacaaga---gcataaagcattagccataagcaaagtcttcttatcaataagatgtgggacttcatgctccttttattatttttctatgg |
97 |
Q |
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| T |
43612712 |
taattattttgacaagaagagcataaagaattagccataaacaaagtcttcttatcaataagatgtgggacttcatgctccttttattatttttctatgg |
43612811 |
T |
|
| Q |
98 |
ctgataannnnnnnatttgagcccaaaacataaccatttgtgtttcataaaacaaagtcacagatggtgatagttgnnnnnnnnnattcaatgtcatttt |
197 |
Q |
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| T |
43612812 |
ctgataatttttttatttgagcccaaaacataaccatttgtgtttcataaaacaaaatcac-gatggtgatagttgtttttttttattcaatgtcatttt |
43612910 |
T |
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| Q |
198 |
acttagttactgtcgttaatggcttctgttgtccaacgttcat |
240 |
Q |
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| T |
43612911 |
acttagttactgtcgttaatggcttgtgttgtccaacgttcat |
43612953 |
T |
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