View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5064_high_9 (Length: 250)
Name: NF5064_high_9
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 36185668 - 36185908
Alignment:
| Q |
1 |
ctagaagcttatattttaagtggtctattttttgtgtgtatgtgtgctgaaaaaagaataggaaatgaatgcaatcgaactcttacaacaactcaaggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36185668 |
ctagaagcttatattttaagtggtctattttttgtgtgtatgtgtgctgaaaaaagaagaggaaatgaatgcaatcgaactcttacaacaactcaaggtg |
36185767 |
T |
|
| Q |
101 |
tatgctttgcagtctaactaacgaagtaacagaaagtttcatttgaccaaattcaatttatcatattactttattacaataaataaatgggaaaatggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
36185768 |
tatgctttgcagtctaactaacgaagtaacagaaagtttcatttgaccaaattcaatttatcatattactttattacaataaataaatgggaaaagggaa |
36185867 |
T |
|
| Q |
201 |
acggtgccgtttaagtgtgaaaattgaaagcatattttctt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36185868 |
acggtgccgtttaagtgtgaaaattgaaagcatattttctt |
36185908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 36209049 - 36209089
Alignment:
| Q |
151 |
attcaatttatcatattactttattacaataaataaatggg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36209049 |
attcaatttatcatattactttattacaataaataaatggg |
36209089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 146
Target Start/End: Original strand, 36208929 - 36209009
Alignment:
| Q |
73 |
aatcgaactcttacaacaactcaaggt--gtatgctttgcagtctaact-----aacgaagtaacagaaagtttcatttga |
146 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36208929 |
aatcgaactcttacaacaactcaaggtgcgtgcgccttgcagtctaactaactgaacgaagtaacagaaagtttcatttga |
36209009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 36208860 - 36208900
Alignment:
| Q |
18 |
aagtggtctattttttgtgtgtatgtgtgctgaaaaaagaa |
58 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
36208860 |
aagtggtctattttttgtgcatatgtatgctgaaaaaagaa |
36208900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University