View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5064_low_10 (Length: 250)
Name: NF5064_low_10
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 43 - 241
Target Start/End: Complemental strand, 44958112 - 44957918
Alignment:
| Q |
43 |
atattctattatgagatataggagctcttaattagaattctcttatattaattcaacttcaaaaacttatatttggttgtgttcaatgtgcatagtaaaa |
142 |
Q |
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| T |
44958112 |
atattctattatgagatataggagctctta----gaattctcttatattaattcaacttcaaaaacttatatttggttgtgttcaatgtgcatagtaaaa |
44958017 |
T |
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| Q |
143 |
cctttttctagtaattagcccatgcttattaaattactcttgatcctaggaacatagatcacccatgtaatgatttccttgtgtccatgcttgcctttg |
241 |
Q |
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| T |
44958016 |
cctttttgtagtaattagcccatgcttattaaattactcttgatcctaggaacatagatcacccatgtaatgatttccttgtgtccatgcttgcctttg |
44957918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 44958355 - 44958306
Alignment:
| Q |
1 |
ttgcaaaatagtgaaatttagttgcattgatttggacttgaaatattcta |
50 |
Q |
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| T |
44958355 |
ttgcaaaatagtgaaatttagttgcattgatttggacttgaaatattcta |
44958306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 32561428 - 32561485
Alignment:
| Q |
101 |
tcaaaaacttatatttggttgtgttcaatgtgcatagtaaaacctttttctagtaatt |
158 |
Q |
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| T |
32561428 |
tcaaaaactttaatttgattgtgttcaagatgcatagtaaaaccattttctagtaatt |
32561485 |
T |
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