View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5064_low_14 (Length: 228)
Name: NF5064_low_14
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064_low_14 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 36185460 - 36185682
Alignment:
| Q |
6 |
aatttctatagaaaaatcaacaaaacctcccctaaaatattgactttgcaaacatagtgcaaaagctagtacaattacataattagttatgaggtaaaaa |
105 |
Q |
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| T |
36185460 |
aatttctatagaaaaatcaacaaaacctcccctaaaatattgactttgcaaacatagtgcaaaagctagtacaattacataattagttatgaggtaaaaa |
36185559 |
T |
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| Q |
106 |
catagccttatacaagtcaaaatcgatatcctaaactcaaaatgaaaatttgnnnnnnngaaagaagaggaaataaacttgctggcttaacaagacaaat |
205 |
Q |
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| T |
36185560 |
catagccttatacaagtcaaaatcgatatcctaaactcaaaatgaaaatttgaaaaaaagaaagaagaggaaataaacttgctggcttaacaagacaaat |
36185659 |
T |
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| Q |
206 |
aattagaactagaagcttatatt |
228 |
Q |
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||||||||||||||||||||||| |
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| T |
36185660 |
aattagaactagaagcttatatt |
36185682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 36208719 - 36208846
Alignment:
| Q |
86 |
aattagttatgaggtaaaaacatagccttatacaagtcaaaatcgatatcctaaactcaaaatgaaaatttgnnnnnnngaaagaagaggaaataaactt |
185 |
Q |
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|||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
36208719 |
aattagttatgaaataaaaacatagccttgtactagtcaaaatcgatatcctaaactcaaaatgaaaatttgaaaagaagaaagaagaggaaattaactt |
36208818 |
T |
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| Q |
186 |
gctggcttaacaagacaaataattagaa |
213 |
Q |
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| T |
36208819 |
gctggcttaacaagacaaataataagaa |
36208846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 36196325 - 36196425
Alignment:
| Q |
14 |
tagaaaaatcaacaaaacctcccctaaaatattgactttgcaaacatagtgcaaaagctagtacaattacataattagttatgaggtaaaaacatagcct |
113 |
Q |
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|||||||||| ||||||| || ||||||||||||| || |||||||||| ||||||| |||||||| | ||||| |||| |||| ||| |||||||| |
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| T |
36196325 |
tagaaaaatcgacaaaacatctcctaaaatattgagatttcaaacatagtacaaaagcctttacaattatacaattatttatcaggtcaaagcatagcct |
36196424 |
T |
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| Q |
114 |
t |
114 |
Q |
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| T |
36196425 |
t |
36196425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 115
Target Start/End: Original strand, 36203101 - 36203210
Alignment:
| Q |
6 |
aatttctatagaaaaatcaacaaaacctcccctaaaatattgactttgcaaacatagtgcaaaagctagtacaattacataattagttatgaggtaaaaa |
105 |
Q |
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|||||||| || ||||| ||||||| ||||| |||||||||| |||| ||||| |||||||| |||||||||| ||||| |||| || |||||| |
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| T |
36203101 |
aatttctacaggaaaatagacaaaacatccccataaatattgacacgccaaaaatagtacaaaagcttgtacaattacgcaattatttatcagttaaaaa |
36203200 |
T |
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| Q |
106 |
catagcctta |
115 |
Q |
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|||||||||| |
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| T |
36203201 |
catagcctta |
36203210 |
T |
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