View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5064_low_3 (Length: 447)
Name: NF5064_low_3
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 30518538 - 30518120
Alignment:
| Q |
18 |
cagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaact |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518538 |
cagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaact |
30518439 |
T |
|
| Q |
118 |
gcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518438 |
gcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccac |
30518339 |
T |
|
| Q |
218 |
catgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30518338 |
catgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaac |
30518239 |
T |
|
| Q |
318 |
gttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaaactaactg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
30518238 |
gttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggt-aattaactg |
30518140 |
T |
|
| Q |
418 |
cctatccatccatccctatg |
437 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
30518139 |
cctatccatccatctctatg |
30518120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 390
Target Start/End: Complemental strand, 22085729 - 22085524
Alignment:
| Q |
185 |
gtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtg |
284 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||| ||||| || || | || || || || || ||||| || || | | ||||||| ||||||| |
|
|
| T |
22085729 |
gtttatgtgtgtcctgagaagacttgtgtgcaccatgaaccttctagagctttgggagatttgacaggaataaagaaacattatagtagaaaacatggtg |
22085630 |
T |
|
| Q |
285 |
aaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtga |
384 |
Q |
| |
|
| ||||||||||||||||| ||||| || || ||||| ||||| || |||||||||||||| || | ||||| |||||||| ||||||||||| |
|
|
| T |
22085629 |
agaagaagtggaagtgtgaaaagtgttccaagaaatatgcagttcaatctgattggaaagctcatagcaagatttgtggaactagagagtacaaatgtga |
22085530 |
T |
|
| Q |
385 |
ctgtgg |
390 |
Q |
| |
|
||||| |
|
|
| T |
22085529 |
ttgtgg |
22085524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 38896247 - 38895856
Alignment:
| Q |
18 |
cagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaact |
117 |
Q |
| |
|
||||||| ||| ||||||||||||| ||| | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||||||||||||||| |
|
|
| T |
38896247 |
cagaagtgatatctttatcaccaaaaacattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatcaaaatcttcaact |
38896148 |
T |
|
| Q |
118 |
gcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccac |
217 |
Q |
| |
|
||| ||||||||||||| || || |||||||| || || ||||||| |||||||||| ||||||||| ||||||||||||||||| || ||||| || |
|
|
| T |
38896147 |
tcatcgacgtggacataacctaccttggaagctgaaacaaagaacaagtaaagaaataaggaagagagtgtatgtgtgtccagagaagacatgtgttcat |
38896048 |
T |
|
| Q |
218 |
catgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaac |
317 |
Q |
| |
|
|| ||||||||||||| | || || |||||||||||||| |||||||||||||| || || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38896047 |
aatcatccttcaagggctttgggagatttaactgggataaagaagcacttttgtaggaaacacggtgagaagaagtggaagtgtgagaagtgctcaaaat |
38895948 |
T |
|
| Q |
318 |
gttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaa |
409 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||| || |||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
38895947 |
tttatgctgttcaatcggattggaaagcacactcaaagacttgtggtactagagaatacaaatgtgattgtggcactatcttttcaaggtaa |
38895856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 42898036 - 42898424
Alignment:
| Q |
20 |
gaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgc |
119 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||| ||||| |||||| | ||||| | ||| ||||| |||||||||||||| ||||||||||| | |
|
|
| T |
42898036 |
gaagttatagccttatcgccaaaaacactgatggcaacaaatagattcatttgtgagatctgtaacaaaggatttcaaagagatcagaatcttcaacttc |
42898135 |
T |
|
| Q |
120 |
atagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccacca |
219 |
Q |
| |
|
||| | | ||||| ||| | ||||||||| | ||||| ||||||| ||| || |||| ||||| |||||||||||||||||| ||||||||| ||||| |
|
|
| T |
42898136 |
ataaaagaggacacaatttgccatggaagttgaagcaaagaacaagcaatgagataaggaagaaagtttatgtgtgtccagaaccaacttgtgtgcacca |
42898235 |
T |
|
| Q |
220 |
tgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgt |
319 |
Q |
| |
|
||| || ||||| || | || ||| ||||||| || || |||||||| || |||||||| ||||| ||||||||||| ||||| |||||||| || |
|
|
| T |
42898236 |
tgacccatcaagagccttgggggacctaactggtatcaagaagcacttctgcagaaagcacggtgagaagaagtggaaatgtgacaagtgctctaagaag |
42898335 |
T |
|
| Q |
320 |
tatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta |
408 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||| ||||| ||||| || |||||||||| ||||||||||||||| |||| |||||||| |
|
|
| T |
42898336 |
tatgcagttcaatcagactggaaagctcactccaaaacctgtggcacaagagaatacagatgtgactgtggaaccctcttctcaaggta |
42898424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 5435806 - 5435530
Alignment:
| Q |
18 |
cagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaact |
117 |
Q |
| |
|
||||||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||||||||||||||| |
|
|
| T |
5435806 |
cagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatcaaaatcttcaact |
5435707 |
T |
|
| Q |
118 |
gcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccac |
217 |
Q |
| |
|
||| ||||||||||||| || || |||||||| || || ||||||| ||| |||||| ||||||||| ||||||||||||||||||| |||| || |
|
|
| T |
5435706 |
tcatcgacgtggacataacctaccttggaagctgaaacaaagaacaagtaaaaaaataaggaagagagtgtatgtgtgtccagagaaaatccgtgttcat |
5435607 |
T |
|
| Q |
218 |
catgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtg |
294 |
Q |
| |
|
|| ||||||||||||| | || || ||||| |||||||| |||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
5435606 |
aatcatccttcaagggctttgggagatttaacagggataaagaagcacttttgtaggaagcacggtgagaagaagtg |
5435530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 40040758 - 40040816
Alignment:
| Q |
251 |
gggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtg |
309 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
40040758 |
gggataaaaaagcactttagtagaaagcacggtgagaagaagtggaagtgtgataagtg |
40040816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 148
Target Start/End: Original strand, 17858939 - 17859066
Alignment:
| Q |
21 |
aagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgca |
120 |
Q |
| |
|
|||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||||||||||||||| || |
|
|
| T |
17858939 |
aagtgatatctttatcaccaaaagcattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatcaaaatcttcaacttca |
17859038 |
T |
|
| Q |
121 |
tagacgtggacataatcttccatggaag |
148 |
Q |
| |
|
| |||||||| |||| || || |||||| |
|
|
| T |
17859039 |
tcgacgtggatataacctaccttggaag |
17859066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 35 - 408
Target Start/End: Complemental strand, 28496482 - 28496106
Alignment:
| Q |
35 |
tcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacata |
134 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| | ||||||| ||| ||||| || |||||||||||||| |||||||| |||||| | ||||| | |
|
|
| T |
28496482 |
tcaccgaagacactcatggcaacaaacagattcatctgtgaaatatgcaacaaagggttccaaagagatcaaaaccttcaactacatagaagaggacaca |
28496383 |
T |
|
| Q |
135 |
atcttccatggaagcttaagcagagaacaaacaaagaa---ataaagaagagagtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaag |
231 |
Q |
| |
|
| |||||||||||||||| |||||| | |||||||| || ||||||| |||||| | ||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
28496382 |
accttccatggaagcttagacagagatccaacaaagatgttatcaagaagaaagtttacatctgtccagagaagacctgtgtccaccatgacccttcaag |
28496283 |
T |
|
| Q |
232 |
ggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcag |
331 |
Q |
| |
|
|||||||||||| | || || ||||||||||||||| |||||||||| ||||| ||||||||||| ||||| || || || ||| ||||| || || |
|
|
| T |
28496282 |
agcacttggtgacctcacaggtataaaaaagcactttagtagaaagcacggtgagaagaagtggaaatgtgaaaaatgttccaaaaaatatgcagtccaa |
28496183 |
T |
|
| Q |
332 |
tcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta |
408 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || |||| |||||||| |
|
|
| T |
28496182 |
tctgattggaaagctcatacaaaaacatgtggtacaagagaatacaaatgtgactgtggcaccctcttctcaaggta |
28496106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 86 - 409
Target Start/End: Original strand, 4160178 - 4160504
Alignment:
| Q |
86 |
aaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaat---aaagaaga |
182 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| | ||||||||| | ||||||||||| ||| | |||| ||| ||||| || |||| |
|
|
| T |
4160178 |
aaaggttttcaaagagatcaaaatcttcagcttcataagagaggacataatttgccatggaagctaaagaaaagaaacgtcaatgaaatcataagaaaga |
4160277 |
T |
|
| Q |
183 |
gagtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatgg |
282 |
Q |
| |
|
||| ||||| ||||||||| ||| ||||| |||||||| ||||||||||||||||||||| ||||||| || || |||||||||| || ||||| || |
|
|
| T |
4160278 |
aagtatatgtttgtccagagccaacatgtgttcaccatgacccttcaagggcacttggtgacctaactggaatcaagaagcactttttcaggaagcacgg |
4160377 |
T |
|
| Q |
283 |
tgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgt |
382 |
Q |
| |
|
||| |||||||||||||||||||| || || ||||| ||||| |||||||| |||||||||||||| || |||| ||||| |||| ||| || || ||| |
|
|
| T |
4160378 |
tgagaagaagtggaagtgtgagaaatgttctaaacgatatgcagttcagtcggattggaaagctcattccaaaatttgtggcactaaagagtataagtgt |
4160477 |
T |
|
| Q |
383 |
gactgtggaactatcttttcaaggtaa |
409 |
Q |
| |
|
||||||||||| |||| ||||||||| |
|
|
| T |
4160478 |
gactgtggaaccctcttctcaaggtaa |
4160504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 36989078 - 36989466
Alignment:
| Q |
20 |
gaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgc |
119 |
Q |
| |
|
||||| ||||| ||||||||| ||||| |||||||||||||||||| | ||||||| |||| || |||||||||||||| |||||||||||||||| |
|
|
| T |
36989078 |
gaagtgatagcactatcaccaacaacactaatggctacaaacagattcgtatgtgaaatatgtaacaagggttttcaaagagaccaaaatcttcaactgc |
36989177 |
T |
|
| Q |
120 |
atagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccacca |
219 |
Q |
| |
|
| || | ||||| || | || |||||||| || || ||||| | |||||| | ||||| |||||||| ||||| || | ||||| ||||| |
|
|
| T |
36989178 |
accgaagaggacacaacttgccttggaagctaaaacaaagaactagtgcagaaattagaaagagggtttatgtttgtcctgaaccttcatgtgtacacca |
36989277 |
T |
|
| Q |
220 |
tgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgt |
319 |
Q |
| |
|
| | ||| |||| ||||||||||| | ||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| ||||| || || |
|
|
| T |
36989278 |
taaccctgcaagagcacttggtgatcttactggaattaaaaagcacttttgtagaaagcatggtgagaaaaagtggaaatgtgataagtgttctaagaaa |
36989377 |
T |
|
| Q |
320 |
tatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggta |
408 |
Q |
| |
|
||||||||||| || |||||||||||||| || |||| ||||||||| || ||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
36989378 |
tatgctgttcaatctgattggaaagctcattccaaaatatgtggtacaagggaatacaaatgtgactgtggaaccatcttttccaggta |
36989466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 185 - 408
Target Start/End: Complemental strand, 12804734 - 12804511
Alignment:
| Q |
185 |
gtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtg |
284 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||||||| ||||||||||| ||||||||| | ||||| || || |||||||||| |||||||||||||| |
|
|
| T |
12804734 |
gtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaagcacttttctagaaagcatggtg |
12804635 |
T |
|
| Q |
285 |
aaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtga |
384 |
Q |
| |
|
| || |||||||| ||||| ||||| || || ||||||||||| || |||||||||||||| || || || ||||||||||| || || | |||||| |
|
|
| T |
12804634 |
agaaaaagtggaaatgtgaaaagtgttctaagaaatatgctgttcaatctgattggaaagctcattctaagacttgtggtactagggagtatagatgtga |
12804535 |
T |
|
| Q |
385 |
ctgtggaactatcttttcaaggta |
408 |
Q |
| |
|
|||||| ||| |||| |||||||| |
|
|
| T |
12804534 |
ctgtggcactctcttctcaaggta |
12804511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 185 - 409
Target Start/End: Original strand, 12774840 - 12775064
Alignment:
| Q |
185 |
gtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtg |
284 |
Q |
| |
|
|||||| |||||||||| ||| ||||| |||||||| ||||||||||| ||||||||| | ||||| || || || |||| || |||||||||||||| |
|
|
| T |
12774840 |
gtttatttgtgtccagaaccaacatgtgttcaccatgacccttcaagggctcttggtgacctcactggaattaagaaacactattttagaaagcatggtg |
12774939 |
T |
|
| Q |
285 |
aaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtga |
384 |
Q |
| |
|
| || || ||||||||||| ||||| || || ||||||||||| || |||||||||||||| || ||||| |||||||||| || || | |||||| |
|
|
| T |
12774940 |
agaaaaaatggaagtgtgaaaagtgttctaagaagtatgctgttcaatctgattggaaagctcattctaaaacttgtggtactaaggagtatagatgtga |
12775039 |
T |
|
| Q |
385 |
ctgtggaactatcttttcaaggtaa |
409 |
Q |
| |
|
|||||| ||| |||| || |||||| |
|
|
| T |
12775040 |
ctgtggcactctcttctccaggtaa |
12775064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 31644449 - 31644076
Alignment:
| Q |
20 |
gaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgc |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||| | | ||||| ||||| ||||||| | || || |||||||||||||||||||| || || || | |
|
|
| T |
31644449 |
gaagtgatagctttatcaccaaagacactattaacaacaaatagatttgtgtgtgagatctgcaacaagggttttcaaagagatcaaaacctacagctac |
31644350 |
T |
|
| Q |
120 |
atagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaa---ataaagaagagagtttatgtgtgtccagagaaaacttgtgtcca |
216 |
Q |
| |
|
|||| | |||||||| || ||||||||| | ||||| || | |||||||| || || ||||||| |||||| ||||||||| | ||||| || |
|
|
| T |
31644349 |
ataggagaggacataacctaccatggaagttgaagcaaaggaacaacaaagatgttattaaaaagagagcttatgtttgtccagagccttcatgtgttca |
31644250 |
T |
|
| Q |
217 |
ccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaa |
316 |
Q |
| |
|
||| | ||||||||||| ||||| || | || || || || || || | | ||||||| |||||||| || || ||||| ||||| ||||||||||| |
|
|
| T |
31644249 |
tcataacccttcaagggctcttggagatcttacaggaattaagaaacattatagtagaaaacatggtgagaaaaaatggaaatgtgataagtgctcaaag |
31644150 |
T |
|
| Q |
317 |
cgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtgg |
390 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||| ||||||||| ||||||| |||||||| ||||| |
|
|
| T |
31644149 |
atctatgctgttcattctgattggaaagctcactctaaaacctgtggtactcgagaatataaatgtgattgtgg |
31644076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 218 - 409
Target Start/End: Complemental strand, 50789009 - 50788818
Alignment:
| Q |
218 |
catgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaac |
317 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||| || || |||| | | | || |||||||| ||||| ||||||||||| |||||||| || |
|
|
| T |
50789009 |
catgacccttcaagggcacttggtgacctcactgggattaagaaacactactctcgcaaacatggtgagaagaaatggaagtgtgataagtgctctaaga |
50788910 |
T |
|
| Q |
318 |
gttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgactgtggaactatcttttcaaggtaa |
409 |
Q |
| |
|
||||||||||| || |||||||| || || || || || ||||| || |||||||| | ||||||||||| ||| |||| || |||||| |
|
|
| T |
50788909 |
agtatgctgttcaatctgattggaaggcacattctaagacttgtggcaccagagaatataggtgtgactgtggcactctcttctccaggtaa |
50788818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 86 - 390
Target Start/End: Original strand, 42286921 - 42287225
Alignment:
| Q |
86 |
aaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagag |
185 |
Q |
| |
|
||||| |||||||| || |||||||||||||| |||||| | ||||| |||||||| |||||||| ||||| | | |||||||| || || | | |
|
|
| T |
42286921 |
aaagggtttcaaagggagcaaaatcttcaacttcatagaagaggacacaatcttccttggaagctaaagcaaaagtccaacaaagagccaaggagaaagg |
42287020 |
T |
|
| Q |
186 |
tttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtga |
285 |
Q |
| |
|
||||| ||||||| ||| || || ||||| || || |||||||| || | || || ||||||| || |||||||| || | | | ||||| ||||| |
|
|
| T |
42287021 |
tttatttgtgtcctgagcccacatgcgtccatcacgacccttcaagagctttaggagatctaactggaattaaaaagcatttctctcgtaagcacggtga |
42287120 |
T |
|
| Q |
286 |
aaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgac |
385 |
Q |
| |
|
||||||||||| ||||| || |||||||| ||||||||||| || || |||||||| || || || || ||||||||||||||||| | |||||| |
|
|
| T |
42287121 |
gaagaagtggaaatgtgaaaaatgctcaaagaaatatgctgttcaatctgactggaaagcacattctaagacttgtggtactagagaatatagatgtgat |
42287220 |
T |
|
| Q |
386 |
tgtgg |
390 |
Q |
| |
|
||||| |
|
|
| T |
42287221 |
tgtgg |
42287225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 52371464 - 52371563
Alignment:
| Q |
18 |
cagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaact |
117 |
Q |
| |
|
||||||| ||| ||||||||||||| || | ||||| |||| ||||||| ||||||||| ||| || | ||||||||| ||||||||||||||||| |
|
|
| T |
52371464 |
cagaagtgatatctttatcaccaaaaccattgatggcaacaagcagattcgtgtgtgaaatttgtctaaaggattttcaaagggatcaaaatcttcaact |
52371563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 53 - 393
Target Start/End: Original strand, 33186506 - 33186846
Alignment:
| Q |
53 |
gctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagctta |
152 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||| |||||||||||||| ||||||||||| |||||| | ||||||||||| |||||||| || | |
|
|
| T |
33186506 |
gctacaaacagatttgtgtgtgaaatatgtaacaaagggtttcaaagagatcagaatcttcaactacatagaagaggacataatctaccatggaaactga |
33186605 |
T |
|
| Q |
153 |
agcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgg |
252 |
Q |
| |
|
|| ||| ||| |||||||| | ||| || |||||||| ||||| || |||||||| || ||||||||||| || || | ||||| |||||||| |
|
|
| T |
33186606 |
gacaaagatcaagtaaagaaattaggaaaagggtttatgtttgtcctgaacctacttgtgttcatcatgatccttctagagctttaggtgatttaactgg |
33186705 |
T |
|
| Q |
253 |
gataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca |
352 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| || |||||||| |||||||| || || || ||||||||||| || ||||||||||||||||| |
|
|
| T |
33186706 |
gataaaaaagcacttttgtagaaaacatggtgagaaaaagtggaaatgtgagaaatgttctaagaaatatgctgttcaatctgattggaaagctcactct |
33186805 |
T |
|
| Q |
353 |
aaaacatgtggtactagagaatacaaatgtgactgtggaac |
393 |
Q |
| |
|
||| |||||| ||||||| || |||||||| |||||||| |
|
|
| T |
33186806 |
aaagtttgtggttctagagagtataaatgtgattgtggaac |
33186846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 86 - 409
Target Start/End: Complemental strand, 5789045 - 5788722
Alignment:
| Q |
86 |
aaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagag |
185 |
Q |
| |
|
||||| |||||||||||||||||||||||||| || ||| | || |||||| | ||||||||| | || || ||||||| ||||| || | |||| || |
|
|
| T |
5789045 |
aaagggtttcaaagagatcaaaatcttcaacttcacagaagaggtcataatttaccatggaagttgaaacaaagaacaagtaaagagattagaaagaaag |
5788946 |
T |
|
| Q |
186 |
tttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtga |
285 |
Q |
| |
|
| ||||| |||||||| ||||||||| || |||||||| ||||| ||| | || || || ||||| || || || ||||||| |||||||||||||| |
|
|
| T |
5788945 |
tatatgtatgtccagaaccaacttgtgtgcatcatgatccatcaagagcattaggggatttgactggaatcaagaaacacttttccagaaagcatggtga |
5788846 |
T |
|
| Q |
286 |
aaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgac |
385 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||||||||| || |||||||||||||| || ||||| ||||| ||||||||||| | ||||||| |
|
|
| T |
5788845 |
gaagaagtggaaatgtgaaaagtgttcaaagaaatatgctgttcaatctgattggaaagctcattccaaaacttgtggcactagagaatatagatgtgac |
5788746 |
T |
|
| Q |
386 |
tgtggaactatcttttcaaggtaa |
409 |
Q |
| |
|
|||||||| |||| ||||||||| |
|
|
| T |
5788745 |
tgtggaaccctcttctcaaggtaa |
5788722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 3271655 - 3271561
Alignment:
| Q |
21 |
aagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaa |
115 |
Q |
| |
|
|||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||||||||||||| |
|
|
| T |
3271655 |
aagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatcaaaatcttcaa |
3271561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 46988101 - 46987818
Alignment:
| Q |
18 |
cagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaagg-ttttcaaagagatcaaaatcttcaac |
116 |
Q |
| |
|
||||||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
46988101 |
cagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatctgtttaaaaggattttcaaaggaatcaaaatcttcaac |
46988002 |
T |
|
| Q |
117 |
tgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtcca |
216 |
Q |
| |
|
| ||| |||||||| |||| || || |||||||| || || ||||||| |||||||||| ||||||||| ||||||||||||||||| || |||| || |
|
|
| T |
46988001 |
ttcatcgacgtggatataacctaccttggaagctgaaacaaagaacaagtaaagaaataaggaagagagtgtatgtgtgtccagagaagacccgtgttca |
46987902 |
T |
|
| Q |
217 |
ccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtg |
300 |
Q |
| |
|
|| ||||||||||||| || || || ||||| |||||||| |||||||||||||| || || |||| || ||||||||||| |
|
|
| T |
46987901 |
taatcatccttcaagggctctgggagatttaacagggataaagaagcacttttgtaggaaccacagtgagaataagtggaagtg |
46987818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 12105846 - 12106172
Alignment:
| Q |
18 |
cagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaagg-ttttcaaagagatcaaaatcttcaac |
116 |
Q |
| |
|
||||||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| ||||| ||||||||| ||||||||||||||| |
|
|
| T |
12105846 |
cagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatctgtttaaaaggattttcaaaggaatcaaaatcttcaac |
12105945 |
T |
|
| Q |
117 |
tgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagagtttatgtgtgtccagagaaaacttgtgtcca |
216 |
Q |
| |
|
| ||| |||||||| |||| || || |||||||| || || ||||||| |||||||||| ||||||||| ||||||||||||||||| || |||| || |
|
|
| T |
12105946 |
ttcatcgacgtggatataacctaccttggaagctgaaacaaagaacaagtaaagaaataaggaagagagtgtatgtgtgtccagagaagacccgtgttca |
12106045 |
T |
|
| Q |
217 |
ccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaa |
316 |
Q |
| |
|
|| ||||||||||||| | || || ||||| ||||||||||||||||||| ||| || || |||| || ||||||||| ||||||||| |
|
|
| T |
12106046 |
taatcatccttcaagggctatgggagatttaacagggataaaaaagcacttttataggaaacacagtgagaataagtggaag---------tgctcaaaa |
12106136 |
T |
|
| Q |
317 |
cgttatgctgttcagtcagattggaaagctcactca |
352 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||| |
|
|
| T |
12106137 |
ttttatgctgttcaatcggattggaaagcacactca |
12106172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 303
Target Start/End: Complemental strand, 52248551 - 52248460
Alignment:
| Q |
212 |
gtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtgaaaagaagtggaagtgtga |
303 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||| | || || | ||||||||||||||||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
52248551 |
gtccaccacaatccttcaagagcactcggtgacctcacaggagtgaaaaagcacttttgtagaaagcatggtgagaagaaatggaaatgtga |
52248460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 46987823 - 46987775
Alignment:
| Q |
304 |
gaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca |
352 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||||||||| |||||| |
|
|
| T |
46987823 |
gaagtgctcaaaattttatgctgttcaatcggattggaaagcacactca |
46987775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 278 - 408
Target Start/End: Complemental strand, 44150930 - 44150800
Alignment:
| Q |
278 |
catggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaataca |
377 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||||||| ||| | ||||||||||| ||||||||||| |||||| ||||| ||||||||||| ||||||| |
|
|
| T |
44150930 |
catggtgagaagaaatggaaatgtgacaagtgctctaaaagatatgctgttcaatcagattggaaggctcaccagaaaacttgtggtactagggaataca |
44150831 |
T |
|
| Q |
378 |
aatgtgactgtggaactatcttttcaaggta |
408 |
Q |
| |
|
||||||| |||||||| || ||||| ||||| |
|
|
| T |
44150830 |
aatgtgattgtggaaccatattttctaggta |
44150800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 86 - 409
Target Start/End: Original strand, 40749194 - 40749517
Alignment:
| Q |
86 |
aaaggttttcaaagagatcaaaatcttcaactgcatagacgtggacataatcttccatggaagcttaagcagagaacaaacaaagaaataaagaagagag |
185 |
Q |
| |
|
||||| || ||||||||||| |||||||| || |||||| | || || || || ||||||||||| ||||| ||| | ||||||||| || ||| | | |
|
|
| T |
40749194 |
aaaggattccaaagagatcagaatcttcagcttcatagaagaggtcacaacctaccatggaagctaaagcaaagatccaacaaagaaccaaggaaaaagg |
40749293 |
T |
|
| Q |
186 |
tttatgtgtgtccagagaaaacttgtgtccaccatgatccttcaagggcacttggtgacttaactgggataaaaaagcacttttgtagaaagcatggtga |
285 |
Q |
| |
|
| || | || || ||||| |||||||||||||| || | | ||||| | |||||| | || || ||||| || || ||| ||||||| ||||| || |
|
|
| T |
40749294 |
tatacatctgcccggagaatacttgtgtccaccacgacgcggctagggccttgggtgacctcaccggaataaagaaacattttagtagaaaacatggcga |
40749393 |
T |
|
| Q |
286 |
aaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactcaaaaacatgtggtactagagaatacaaatgtgac |
385 |
Q |
| |
|
||||| ||||||||||| ||||| || || ||||| || || || ||||||||||||||| | ||||| ||||||||||||||||| || ||||| |
|
|
| T |
40749394 |
gaagaaatggaagtgtgataagtgttccaagaaatatgcagtccaatctgattggaaagctcacactaaaacttgtggtactagagaatataagtgtgat |
40749493 |
T |
|
| Q |
386 |
tgtggaactatcttttcaaggtaa |
409 |
Q |
| |
|
||||| || |||| ||||||||| |
|
|
| T |
40749494 |
tgtggtacactcttctcaaggtaa |
40749517 |
T |
|
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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 1983162 - 1983246
Alignment:
| Q |
268 |
ttgtagaaagcatggtgaaaagaagtggaagtgtgagaagtgctcaaaacgttatgctgttcagtcagattggaaagctcactca |
352 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||||||||||||||| ||||| |||||| || ||||||||||| |||||| |
|
|
| T |
1983162 |
ttgtaggaagcacagtgagaagaagtggaagtgtgagaagtgctcaaaattttatgttgttcaatcggattggaaagcacactca |
1983246 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 12952385 - 12952505
Alignment:
| Q |
18 |
cagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaact |
117 |
Q |
| |
|
||||||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||||||||||||||| |
|
|
| T |
12952385 |
cagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatcaaaatcttcaact |
12952484 |
T |
|
| Q |
118 |
gcatagacgtggacataatct |
138 |
Q |
| |
|
||| | |||||| ||||||| |
|
|
| T |
12952485 |
tcatcgtcgtggatataatct |
12952505 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 12938236 - 12938353
Alignment:
| Q |
18 |
cagaagttatagctttatcaccaaagacactcatggctacaaacagattcttgtgtgaaacatgtgggaaaggttttcaaagagatcaaaatcttcaact |
117 |
Q |
| |
|
||||||| ||| ||||||||||||| || | ||||| |||||||||||| ||||||||| ||| || | ||||||||| ||||||||||||||||| |
|
|
| T |
12938236 |
cagaagtgatatctttatcaccaaaaccattgatggcaacaaacagattcgtgtgtgaaatttgtctaaaggattttcaaagggatcaaaatcttcaact |
12938335 |
T |
|
| Q |
118 |
gcatagacgtggacataa |
135 |
Q |
| |
|
||| | |||||| |||| |
|
|
| T |
12938336 |
tcatcgtcgtggatataa |
12938353 |
T |
|
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