View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5064_low_8 (Length: 252)
Name: NF5064_low_8
Description: NF5064
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5064_low_8 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 47064707 - 47064468
Alignment:
| Q |
13 |
atactcaagaaaaagtctaagctgtgtagcctggttaaaacaagaagaattcatctaaaaaattggaaataagcttatttaaatgaatatagattttcaa |
112 |
Q |
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| T |
47064707 |
atactcaagaaaaagtctaagctgtgtagcctggttaaaacaagaagaattcatctaaaaaattggaaataagcttatttaaatgaatatagattttcaa |
47064608 |
T |
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| Q |
113 |
gtaagcaaagtcaacatacttctcttgcaaataaaagacttccaggtgatatagatgacacgttaaaatctgcatgggctgcagtttctgcattggtcat |
212 |
Q |
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| T |
47064607 |
gtaagcaaaatcaacatacttctcttgcaaataaaagacttccaggtgatatagatgacacgttaaaatctgcttgggctgcagtttctgcattggtcat |
47064508 |
T |
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| Q |
213 |
atcaaataacttttttcgtccttccgtctcagagccgatt |
252 |
Q |
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| T |
47064507 |
atcaaataacttttttcttccttccgtctcagagccgatt |
47064468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 47055628 - 47055391
Alignment:
| Q |
13 |
atactcaagaaaaagtctaagctgtgtagcc-tggttaaaacaagaagaattcatctaaaaa-attggaaataagcttatttaaatgaatataga--ttt |
108 |
Q |
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| T |
47055628 |
atactcaagaaaaagtctaaactgtgtatcagtgtttaaaacaagacgaattcgtcaaaatatagtggaaataagcttatttaaatgaatatagagattt |
47055529 |
T |
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| Q |
109 |
tcaagtaagcaaagtcaacatacttctcttgcaaataaaagacttccaggtgatatagatgacacgttaaaatctgcatgggctgcagtttctgcattgg |
208 |
Q |
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| T |
47055528 |
tcaagtaagcaaaatcaacctacttctcttgcaaataaaagactttcaggtgatatagatgacacgttaacatctgcatgtgctgctgtttctgcattgg |
47055429 |
T |
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| Q |
209 |
tcatatcaaataacttttttcgtccttccgtctcagag |
246 |
Q |
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| T |
47055428 |
tcatatctgataacatttttcgtccttccgtctcagag |
47055391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 47061109 - 47060994
Alignment:
| Q |
129 |
tacttctcttgcaaataaaagacttccaggtgatatagatgacacgttaaaatctgcatgggctgcagtttctgcattggtcatatcaaataactttttt |
228 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| | |||||||| ||||||||| ||||| |||| |
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| T |
47061109 |
tactcctcttgcaaataaaagacttccaggtgatatagatgacatgttaaaatttgcatgtgctgctatgtctgcatt-gtcatatcagataacattttc |
47061011 |
T |
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| Q |
229 |
cgtccttccgtctcaga |
245 |
Q |
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| T |
47061010 |
cgtccttccgtctcaga |
47060994 |
T |
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