View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5065-Insertion-1 (Length: 1039)
Name: NF5065-Insertion-1
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065-Insertion-1 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 933; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 933; E-Value: 0
Query Start/End: Original strand, 7 - 1039
Target Start/End: Original strand, 2681010 - 2682053
Alignment:
| Q |
7 |
aagtatgtttttatcattgatcaaaggagatcatgattccattcattgattaaagaaaaaccattaacataa-tccaaggcaattgtaaattctttggtc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
2681010 |
aagtatgtttttatcattgatcaaaggagatcatgattccattcattgattaaagaaaaaccattaacattactccaaggcaattgtaaattctttggtc |
2681109 |
T |
|
| Q |
106 |
gaaggttttgctttcaacacttgttgaaaattcattaaataaggtatcaatataagcttggacaagtacaaaatgaatgttaaccgtgtcaaaattaaac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2681110 |
gaaggttttgctttcaacacttgttgaaaattcattaaataaggtatcaatataagcttggacaagtacaaaatgaatgttaaccgtgtcaaaattaaac |
2681209 |
T |
|
| Q |
206 |
tctataaaatcgaatttgcaactgccaccaaaccctttacagaaacattttatcgtgtttctggactatacaaatatgttggatgatgttatgcttattt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2681210 |
tctataaaatcgaatttgcaactgccaccaaaccctttacagaaacattttatcatgtttctggactatacaaatatgttggatgatgttatgcttattt |
2681309 |
T |
|
| Q |
306 |
ccctacctagcatctagcaatgtgactgtaacttggttcacactccatgtttcatcttgcttacttgaagaggaatcagtctcttgaggattccttgacc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2681310 |
ccctacctagcatctagcaatgtgactgtaacttggttcacactccatgtttcatcttgcttacttgaagaggaatcagtctcttgaggattccttgacc |
2681409 |
T |
|
| Q |
406 |
ttccaagcgaaaatcctggacttctaggttctggcattagtgcagtttcactgcctagcatcaagagcactgaaggcattgttggtctatcttctgcacg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
2681410 |
ttccaagcgaaaatcctggacttctaggttctggcattagtgcagtttcactgcctagcatcaagagcactgaaggcattgttggcctatcttctgcacg |
2681509 |
T |
|
| Q |
506 |
ttcttggacacataagagtccaacatgtatgcatctaagaacttcagattctgtatatgaatttccaatcgatgaatcaatgagttccaatgcattgcct |
605 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2681510 |
ttcttggacacataatagtccaacatgtatgcatctaagaacttcagattctgtatatgaatttccaatcgatgaatcaatgagttccaatgcattgcct |
2681609 |
T |
|
| Q |
606 |
tctctccactgtccccatgcctacaacaagaaaacatattatttcttcaattcttggtgcttactacatagtagaagataatatcatatcacatcatagt |
705 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2681610 |
tctctccactgtccccatgcctacaacaagaaaacatattatttcttcaattcttggtgcttactacatagtagaagataatatcatatcacatcatagt |
2681709 |
T |
|
| Q |
706 |
agtttaattgaagaattattttcacttacattccttagaagattcatatcatcgtccgcatagtagaatcctctatttttctttccacttatgatctcta |
805 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2681710 |
agtttaattgaagaattattttcacttacattccttagaagattcatatcgtcgtccgcatagtagaatcctctatttttctttccacttatgatctcta |
2681809 |
T |
|
| Q |
806 |
gcacaagaactccaaagct-aaaacatctgatttaactgagaag-ttccgtccatagcatactcaggagacatatagccactgtacattaac-aaacata |
902 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2681810 |
gcacaagaactccaaagctaaaaacatctgatttaactgagaagtttccgtccatagcatattcaggagacatatagccactgtacattaacaaaacata |
2681909 |
T |
|
| Q |
903 |
c-aaatgataagttattttatatttggta-tttattaaggagtactg-tatgaaacattgcactactcactatg-tcca--cactctcagtgtatttgct |
996 |
Q |
| |
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| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
2681910 |
caaaatgataagttattttatatttggtattttattaaggagtactgttatgaaacattgcactactcactatgttccaacaactctcagtgtatttgct |
2682009 |
T |
|
| Q |
997 |
tcagtttgatctctgcc-aatattctagccatcccaaagtctga |
1039 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
2682010 |
tcagtttgatctctgccaaatattctagccatcccaaagtctga |
2682053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 117 - 461
Target Start/End: Complemental strand, 3050404 - 3050071
Alignment:
| Q |
117 |
tttcaacacttgttgaaaattcattaaataaggtatcaatataagcttggacaagtacaaaatgaatgttaaccgtgtcaaaattaaactctataaaatc |
216 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |
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|
| T |
3050404 |
tttcaacacttgttaaaaattcattaaataaggtatcaatataagattggatctgtacaaaatgaatgttaaccgtctcaaaatt--------------- |
3050320 |
T |
|
| Q |
217 |
gaatttgcaactgccaccaaaccctttacagaaacattttatcgtgtttctgg-actatacaaatatgttggatgatgttatgcttatttccctacctag |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||| |
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|
| T |
3050319 |
-----tgcaactgccaccaaaccctttacagaaacatttttccatgtttctgggactatacaaatatgttggatgatgttacgcttctttccctacctat |
3050225 |
T |
|
| Q |
316 |
catctagcaatgtgactgtaacttggttcacactccatgtttcatc-ttgcttacttgaagaggaatcagtct-------cttgaggattccttgacctt |
407 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||| |||||| ||| ||||||||||||||| | | ||||| | |||||||| |
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|
| T |
3050224 |
aatctagcaatgtgactgtgacttggttcacactccatccttcatctttgctttcttaaagaggaatcagtctcctaaggcctaaggatcctttgacctt |
3050125 |
T |
|
| Q |
408 |
ccaagcgaaaatcctggacttctaggttctggcattagtgcagtttcactgcct |
461 |
Q |
| |
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||||| ||||| |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3050124 |
ccaagggaaaaccctggacttctaagttctggcattagtgcagtttcactgcct |
3050071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 772 - 838
Target Start/End: Complemental strand, 2672827 - 2672760
Alignment:
| Q |
772 |
aatcctctatttttctttccacttatgatctctagcacaagaactccaaagct-aaaacatctgattt |
838 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||||||| ||||||||||| || |||||||| ||||| |
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|
| T |
2672827 |
aatcctctattcttcattccacttatgatttctagcacgagaactccaaaactgaaaacatcagattt |
2672760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 787 - 886
Target Start/End: Complemental strand, 36366770 - 36366669
Alignment:
| Q |
787 |
tttccacttatgatctctagcacaagaactccaaagct-aaaacatctgatttaactgagaag-ttccgtccatagcatactcaggagacatatagccac |
884 |
Q |
| |
|
|||||||||||||| || | ||||||||| ||||| || |||||||| ||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |
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|
| T |
36366770 |
tttccacttatgatttccatcacaagaacaccaaaactgaaaacatcagatttcactgagaagattccatccatagcatactctggagacatatagccac |
36366671 |
T |
|
| Q |
885 |
tg |
886 |
Q |
| |
|
|| |
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|
| T |
36366670 |
tg |
36366669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 464 - 607
Target Start/End: Complemental strand, 36367080 - 36366937
Alignment:
| Q |
464 |
catcaagagcactgaaggcattgttggtctatcttctgcacgttcttggacacataagagtccaacatgtatgcatctaagaacttcagattctgtatat |
563 |
Q |
| |
|
|||||| | |||||||| ||||||||| ||||||||||| || ||||| || ||||| || ||||| ||||||||||||| ||| |||| | || |||| |
|
|
| T |
36367080 |
catcaacaccactgaagacattgttggcctatcttctgctcgctcttgtacgcataatagcccaacttgtatgcatctaaaaacctcagctggtgaatat |
36366981 |
T |
|
| Q |
564 |
gaatttccaatcgatgaatcaatgagttccaatgcattgccttc |
607 |
Q |
| |
|
||||| |||| || || ||||| || ||||| ||||| ||||| |
|
|
| T |
36366980 |
gaattaacaatagaagagtcaatcagctccaaagcatttccttc |
36366937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 316 - 385
Target Start/End: Complemental strand, 36367222 - 36367153
Alignment:
| Q |
316 |
catctagcaatgtgactgtaacttggttcacactccatgtttcatcttgcttacttgaagaggaatcagt |
385 |
Q |
| |
|
|||||| || |||||| ||||||||||||||| | || | ||||||||| |||||||| || |||||||| |
|
|
| T |
36367222 |
catctaccattgtgacagtaacttggttcacagtgcaagattcatcttgtttacttgaggatgaatcagt |
36367153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 779 - 885
Target Start/End: Complemental strand, 23189994 - 23189886
Alignment:
| Q |
779 |
tatttttctttccacttatgatctctagcacaagaactccaaagctaaa-acatctgatttaactgagaagtt-ccgtccatagcatactcaggagacat |
876 |
Q |
| |
|
|||| ||||| |||||||| ||||||| || |||||||||||||||||| || || |||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
23189994 |
tattcttcttgccacttataatctctaacagaagaactccaaagctaaagacgtcggatttaactgagaaaaggccttccatagcatattcaggagacat |
23189895 |
T |
|
| Q |
877 |
atagccact |
885 |
Q |
| |
|
|||||||| |
|
|
| T |
23189894 |
gtagccact |
23189886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 779 - 885
Target Start/End: Complemental strand, 23182617 - 23182509
Alignment:
| Q |
779 |
tatttttctttccacttatgatctctagcacaagaactccaaagctaaa-acatctgatttaactgagaagtt-ccgtccatagcatactcaggagacat |
876 |
Q |
| |
|
|||| ||||| |||||||| ||||||| || ||| ||||||||||| || || || |||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
23182617 |
tattcttcttgccacttataatctctaacaaaagcactccaaagctgaagacgtcggatttaactgagaaaaggccttccatagcatattcaggagacat |
23182518 |
T |
|
| Q |
877 |
atagccact |
885 |
Q |
| |
|
|||||||| |
|
|
| T |
23182517 |
gtagccact |
23182509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000006; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 788 - 886
Target Start/End: Complemental strand, 3103579 - 3103479
Alignment:
| Q |
788 |
ttccacttatgatctctagcacaagaactccaaagct-aaaacatctgatttaactgagaa-gttccgtccatagcatactcaggagacatatagccact |
885 |
Q |
| |
|
||||||| ||||||||||||| |||||| |||||||| ||||||||||| || ||||| || ||| ||||||||||| || |||| |||||| ||||| |
|
|
| T |
3103579 |
ttccactgatgatctctagcaaaagaacaccaaagctgaaaacatctgactttactgaaaacaatccttccatagcatattctggagccatatatccact |
3103480 |
T |
|
| Q |
886 |
g |
886 |
Q |
| |
|
| |
|
|
| T |
3103479 |
g |
3103479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 787 - 844
Target Start/End: Complemental strand, 3123111 - 3123053
Alignment:
| Q |
787 |
tttccacttatgatctctagcacaagaactccaaagct-aaaacatctgatttaactga |
844 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
3123111 |
tttccactgatgatctctagcaaaagaacgccaaagctgaaaacatctgacttcactga |
3123053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 787 - 844
Target Start/End: Original strand, 3132737 - 3132795
Alignment:
| Q |
787 |
tttccacttatgatctctagcacaagaactccaaagct-aaaacatctgatttaactga |
844 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
3132737 |
tttccactgatgatctctagcaaaagaacgccaaagctgaaaacatctgacttcactga |
3132795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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