View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065-Insertion-11 (Length: 394)
Name: NF5065-Insertion-11
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065-Insertion-11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 6 - 394
Target Start/End: Original strand, 28988007 - 28988395
Alignment:
| Q |
6 |
cagattgtgtggagggattcgacgcatgttggatgtgccttgcagcattgcaagaacaacggtactggcatgctcatcgcgtgcgagtataatccagcgg |
105 |
Q |
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| T |
28988007 |
cagattgtgtggagggattcgacgcatgttggatgtgccttgcaacattgcaagaacaacggtactggcatgctcatcgcgtgcgagtataatccagcgg |
28988106 |
T |
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| Q |
106 |
gtaattatgtcaatgaaaatcctcttgttcatgcagctaagtaattttgagtggatcatttcgatccactcaactttatggtacatccgactgccggacg |
205 |
Q |
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| T |
28988107 |
gtaattatgtcaatgagaatcctcttgttcatgcagctaagtaattttgagtggatcatttcgatccactcaactttatggtacattcgactgccggacg |
28988206 |
T |
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| Q |
206 |
ttaaattgagataagtgattttaatctaaccttatgcatacaattgtatcaaattcatgactctattttacttttgtcttgacctctcttgatatatata |
305 |
Q |
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| T |
28988207 |
ttaaattgagataagtgattttaatctaaccttatacatacaattgtatcaaattcatgaccctattttacttttgtcttgacctctcttgatatatata |
28988306 |
T |
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| Q |
306 |
actaatgaataattacatcacatatatgtatatgctcctttattcttatcttccttttttattttggagctttattgaaatttcgttaa |
394 |
Q |
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| T |
28988307 |
actaatgaataattacatcacatatatgtatatgctcctttattcttatcttccttttttattttggagctttattgaaatttcgttaa |
28988395 |
T |
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