View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065-Insertion-13 (Length: 351)
Name: NF5065-Insertion-13
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065-Insertion-13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 45974145 - 45973798
Alignment:
| Q |
8 |
gtaatgtggttggttgtgaacttgtgacattgtgcactgttgatttaacttgtaatgggttggagagttgcaaaatagtcaatgccaatggtggtggtgg |
107 |
Q |
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| T |
45974145 |
gtaatgtggttggttgtgaacttgtgacattgtgcactgttgatttaacttgtaatgggttggagagttgcaaaatagtcaatgccagtggtggtggtgg |
45974046 |
T |
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| Q |
108 |
tgggaaagaaaacacaagagtactttcttatcaactaaaattcggattgtgattcactgcattcaataaaataacacagtcacacacttaaacgaaacat |
207 |
Q |
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| T |
45974045 |
tgggaaagaaaacacaagagtactttcttatcaactaaaattcggattgtgattcactgcattcaataaaataacacagtcacacacttaaacgaaacat |
45973946 |
T |
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| Q |
208 |
aaccatctgattaaa----------atatttgccttctctaatttattccacgttaaacccactacacagaatatttgcctgctcaaacacgttcttctg |
297 |
Q |
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| T |
45973945 |
aaccatctgattaaaataacggtatatatttgccttctctaatttattccacgttaaacccactgcacagaatatt---------aaacacgttcttctg |
45973855 |
T |
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| Q |
298 |
taaaaatttggaatctcaaa---ctcctccctttctccttgtgtttctcaccatctt |
351 |
Q |
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| T |
45973854 |
taaaaatttggaatcccaaactcctcctccctttctccttgtgtttctcaccatctt |
45973798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 10946384 - 10946447
Alignment:
| Q |
155 |
tgtgattcactgcattcaataaaataacacagtcacacacttaaacgaaacataaccatctgat |
218 |
Q |
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| T |
10946384 |
tgtgattcactgcagtcattaaaatgacgcagtcacacagttaaacaatacaaaaccatctgat |
10946447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 29175841 - 29175904
Alignment:
| Q |
155 |
tgtgattcactgcattcaataaaataacacagtcacacacttaaacgaaacataaccatctgat |
218 |
Q |
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| T |
29175841 |
tgtgactcactgcagtcagtaaaatgacacagtcacacattcaaacaaaacataaccatctgat |
29175904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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