View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5065-Insertion-3 (Length: 960)

Name: NF5065-Insertion-3
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5065-Insertion-3
NF5065-Insertion-3
[»] chr2 (6 HSPs)
chr2 (8-960)||(28734984-28735938)
chr2 (148-779)||(28700124-28700754)
chr2 (290-737)||(28742348-28742795)
chr2 (295-592)||(28783337-28783637)
chr2 (10-152)||(28699486-28699629)
chr2 (11-144)||(28742120-28742253)
[»] chr8 (18 HSPs)
chr8 (297-489)||(1948482-1948674)
chr8 (31-119)||(2029744-2029832)
chr8 (297-489)||(2037604-2037796)
chr8 (32-119)||(1948202-1948289)
chr8 (297-489)||(2029481-2029673)
chr8 (297-492)||(10768502-10768697)
chr8 (31-119)||(2055734-2055822)
chr8 (31-119)||(2051877-2051965)
chr8 (31-119)||(2058938-2059026)
chr8 (297-491)||(2058003-2058197)
chr8 (297-489)||(2034040-2034232)
chr8 (31-119)||(2034662-2034750)
chr8 (297-489)||(2050772-2050964)
chr8 (31-119)||(2038740-2038828)
chr8 (31-119)||(2047983-2048071)
chr8 (297-489)||(2055181-2055373)
chr8 (31-119)||(10769391-10769479)
chr8 (297-422)||(2046910-2047035)
[»] chr4 (1 HSPs)
chr4 (31-120)||(48904981-48905070)
[»] chr1 (3 HSPs)
chr1 (313-489)||(16439170-16439346)
chr1 (75-120)||(16414327-16414372)
chr1 (301-414)||(16418965-16419078)


Alignment Details
Target: chr2 (Bit Score: 847; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 847; E-Value: 0
Query Start/End: Original strand, 8 - 960
Target Start/End: Original strand, 28734984 - 28735938
Alignment:
Q  8 tcatgtgctctaagtcctgccttgaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcat 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28734984 tcatgtgctctaagtcctgccttgaaaaagcatgcaacagatattcttggaccaatgtcatttgccagtactctatgttcaacactcttgaatttatcat 28735083  T
Q  108 ttgttataagctgtagttcattcaaatttataattagataaattcgtgttaaggttatttccgcatataagaaaaaagtactttcttagccgcacaatga 207  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28735084 ttgttataagctgtagttcattaaaatttataattagataaattcgtgttaaggttatttccacatataagaaaaaagtactttcttagccgcacaatga 28735183  T
Q  208 aacgattcatttctnnnnnnnntctagcacaaaattattaacagttttaattttcaatgcaatattacaaccctaatagtaaaatagagaacttgcctgc 307  Q
    ||||||||||||||        |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28735184 aacgattcatttctaaaaaaaatctaccacaaaattattaacagttttaattttcaatgcaatattacaaccctaatagtaaaatagagaacttgcctgc 28735283  T
Q  308 agaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaatatggtcttgga 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28735284 agaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtaaagaacttgaagaccaccaatatggtcttgga 28735383  T
Q  408 gaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgaccaagtaatatgttccc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28735384 gaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgaccaagtaatatgttccc 28735483  T
Q  508 ttcacaacaatctaagtcctttaaatggtttgaatgcaatccaagagcttctgatagtaattcaaagagtattgttccaagtttcattagacgtgttcca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28735484 ttcacaacaatctaagtcctttaaatggtttgaatgcaatccaagagcttctgatagtaattcaaagagtattgttccaagtttcattagacgtgttcca 28735583  T
Q  608 tattccataagtatatccctacaagaatatgaaatcaccaagcaataaattaagttccctatagtaggaatatcatgttaaacttaaccttctagccttt 707  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  28735584 tattccataagtatatccctacaagaatatgaaatcaccaagcaataaattaagttccctatagtaggaatatcatgttatacttaaccttctagccttt 28735683  T
Q  708 tataattagctgtttaatttcacttaacatctttgattgataagtttttcatgttcattattagagtttggaggcacatgaaacactaacattagaatca 807  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  28735684 tataattagctgtttaatttcacttaacatctttgattgataagtttttcatgttcattagtagagtttggagacacatgaaacactaacattataatca 28735783  T
Q  808 caagaatagttnnnnnnntcaagtaattaaatgaatgtacctgtatgtgttggtgttatatatagacacgtgtaggacaccaaatacgcctttttggtgt 907  Q
    |||||||||||       ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28735784 caagaatagtttaaaaaatcaagtaattaaatgaatgtatctgtatgtgttggtgttatatatagatacgtgtaggacaccaaatacgcctttttggtgt 28735883  T
Q  908 taagtagttggagatgggactattcatggtctagtttagaaag--aaatcaaccc 960  Q
    ||  |||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  28735884 tagctagttggagatgggactattcatggtctagtttagaaaggaaaatcaaccc 28735938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 148 - 779
Target Start/End: Original strand, 28700124 - 28700754
Alignment:
Q  148 aattcgtgttaaggttatttccgcatataagaaaaaagtactttcttagccgcacaatgaaacgattcatttctnnnnnnnntctagcacaaaattatta 247  Q
    ||||| |||||||||||||| | ||||    |||||||| ||| ||||| |||||||||||||||||||||| |        |||| || ||||||||||    
T  28700124 aattcatgttaaggttatttacacata----aaaaaagttcttgcttagtcgcacaatgaaacgattcatttgtaaaaaaaatctatcaaaaaattatta 28700219  T
Q  248 acagttttaattttcaatgcaatattacaaccctaatagtaaaatagagaacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccg 347  Q
    ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  28700220 acaattttaattttcaatgcaatattacaagcctaatagtaaaatagagaacttgcctgcagaagatcaccgatattaacaacaagagccccgggtaccg 28700319  T
Q  348 gtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaatat---ggtcttggagaagcactgtgagaaaactaccatcagaatgtttggt 444  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  28700320 gtggtacatcgatccacttgtcttggtgaagaacttgaaggccaccaataatacggtcttggagaagcactgtgagaaaactaacatcagaatgtttggt 28700419  T
Q  445 ggttcccattgttaaatctggttcaggacaagcaggatagtaatgaccaagtaatatgttcccttcacaacaatctaagtcctttaaatggtttgaatgc 544  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||  || ||||| ||||||||||| |||||||| |||||||||| ||||    
T  28700420 ggttcccattgttaaatctggttcaggacaagcaggatagtaatgaccaattatcatattcccctcacaacaatccaagtccttcaaatggtttggatgc 28700519  T
Q  545 aatccaagagcttctgatagtaattcaaagagtattgttccaagtttcattagacgtgttccatattccataagtatatccctacaagaatatgaaatca 644  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28700520 aatccaagagcttctgatagtaattcaaagagtactcttccaagtttcattagacatgttccatattccataagtatatccctacaagaatatgaaatca 28700619  T
Q  645 ccaagcaataaattaagttccctatagtaggaatatcatgttaaacttaaccttctagccttttataattagctgtttaatttcacttaacatctttgat 744  Q
    ||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||    
T  28700620 ccaagcaataaattatgttccctataataggaataacatgttaaacttaacctcctagctttttataattagttgtttaatttcacttaacatctttgat 28700719  T
Q  745 tgataagtttttcatgttcattattagagtttgga 779  Q
    ||||||    ||||||||||||| |||||||||||    
T  28700720 tgataatcggttcatgttcattagtagagtttgga 28700754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 290 - 737
Target Start/End: Original strand, 28742348 - 28742795
Alignment:
Q  290 aatagagaacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagac 389  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||  ||||||||||| ||||||||| | | ||||||||||||||| |    
T  28742348 aatagagaacttgcctgcagaacatcaccaatattaataacaagagcctcaggtattggtggtacatcaatccactttcccttgtgaagaacttgaaggc 28742447  T
Q  390 caccaatatggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 489  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||    
T  28742448 caccaatatggtcttgaagaagcactgtgaggaaactactatcagaatgtttggcggttcccatcgttaaatgtggttcaggacaagcaggatagtaatg 28742547  T
Q  490 accaagtaatatgttcccttcacaacaatctaagtcctttaaatggtttgaatgcaatccaagagcttctgatagtaattcaaagagtattgttccaagt 589  Q
     | |||||| |  ||||| ||| ||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||   ||||||||    
T  28742548 gcaaagtaacaaattcccctcagaacaatctaagtcttttaaatggtttggatgcaatccaagtgcttctgatagtaattcaaagagtacaattccaagt 28742647  T
Q  590 ttcattagacgtgttccatattccataagtatatccctacaagaatatgaaatcaccaagcaataaattaagttccctatagtaggaatatcatgttaaa 689  Q
    ||||||| | ||  ||||||||||| || |||||| |||||| || ||||||||||||||||||   ||||| ||| ||| |||| ||||| ||||| ||    
T  28742648 ttcattacatgttctccatattccagaaatatatctctacaaaaagatgaaatcaccaagcaattggttaagctccatattgtagaaatattatgtttaa 28742747  T
Q  690 cttaaccttctagccttttataattagctgtttaatttcacttaacat 737  Q
    |||||||| |||||||||||||||||  ||| ||||||||||||||||    
T  28742748 cttaacctcctagccttttataattatttgtctaatttcacttaacat 28742795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 295 - 592
Target Start/End: Original strand, 28783337 - 28783637
Alignment:
Q  295 agaacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccacca 394  Q
    |||||||||||| ||||||||||||| ||||||||||||||| || ||||  || |||| ||| |||||||| |  ||||||| |||||| || ||||||    
T  28783337 agaacttgcctgtagaagatcaccaacattaacaacaagagcatcaggtattggaggtatatcaatccacttgttctggtgaaaaacttggaggccacca 28783436  T
Q  395 atatggtc---ttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgac 491  Q
    ||||| ||   ||| ||||||| ||||||||||| || |||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  28783437 atatgatcatcttgaagaagcaatgtgagaaaacaactatcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatgac 28783536  T
Q  492 caagtaatatgttcccttcacaacaatctaagtcctttaaatggtttgaatgcaatccaagagcttctgatagtaattcaaagagtattgttccaagttt 591  Q
     |||| |||   |||| | |  |||| | | ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |  ||||||||||    
T  28783537 taagtgatagaatccccttagcacaacccatgtcttttaaatggtttggatgcaatccaagagcttctgatagtaattcaaagagtgtcattccaagttt 28783636  T
Q  592 c 592  Q
    |    
T  28783637 c 28783637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 10 - 152
Target Start/End: Original strand, 28699486 - 28699629
Alignment:
Q  10 atgtgctctaagtcctgccttgaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcattt 109  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  28699486 atgtgctctaagacctgccttgaaaaagcatgcaacagatattcttggaccaatgccatttgccagtactctatgttcaacactcttgaatttgtcattt 28699585  T
Q  110 gttataagctgtagttcatt-caaatttataattagataaattc 152  Q
    ||||| ||||||||||||||  |||||| |||||||||||||||    
T  28699586 gttatcagctgtagttcattaaaaatttctaattagataaattc 28699629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 28742120 - 28742253
Alignment:
Q  11 tgtgctctaagtcctgccttgaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcatttg 110  Q
    ||||||||| | |||||| |||||||  |||||||||||| |||||||||| |   |||||| |||||||| || ||||||||||||||| | |||||||    
T  28742120 tgtgctctaggacctgccctgaaaaaagatgcaacagatactcttggaccaatagtatttgctagtactctgtgctcaacactcttgaatctgtcatttg 28742219  T
Q  111 ttataagctgtagttcattcaaatttataattag 144  Q
    |||||||||| |||||| | |||  |||||||||    
T  28742220 ttataagctgcagttcaataaaaactataattag 28742253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 1e-25; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 297 - 489
Target Start/End: Original strand, 1948482 - 1948674
Alignment:
Q  297 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 396  Q
    |||||||||||| |||||||||||||||||| |  |||||  | | | | |||| || ||| ||||| || ||||  | ||||||||| |||||||||||    
T  1948482 aacttgcctgcaaaagatcaccaatattaactatgagagctccagttgcaggtgttatatcaatccatttatcttcataaagaacttggagaccaccaat 1948581  T
Q  397 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 489  Q
    ||||||||| |||||||||||||||||||||   || ||||| || || |||||||| || |  |||||||||||||||| |||||| |||||    
T  1948582 atggtcttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatg 1948674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 2029832 - 2029744
Alignment:
Q  31 gaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 119  Q
    |||||||||||||||||||||||||||||||   | |||||| | ||||||||||||||||||||||||| ||||||||||||||||||    
T  2029832 gaaaaagcatgcaacagatattcttggaccaacttgatttgcaactactctatgttcaacactcttgaatctatcatttgttataagct 2029744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 297 - 489
Target Start/End: Complemental strand, 2037796 - 2037604
Alignment:
Q  297 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 396  Q
    ||||||||||||||||||||||||||||||| |  |||||  | | ||| |||| || ||| ||||| || ||||  | ||||||||| |||||||||||    
T  2037796 aacttgcctgcagaagatcaccaatattaactatgagagctccagatacaggtgttatatcaatccatttatcttcataaagaacttggagaccaccaat 2037697  T
Q  397 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 489  Q
    ||||||||||| ||||||||||||||||| |   || ||||| ||||  |||||||  || || |||||||| ||||||| |||||| |||||    
T  2037696 atggtcttggataagcactgtgagaaaaccatggtctgaatgcttggctgttcccacagtcaattctggttccggacaagaaggataataatg 2037604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 1948202 - 1948289
Alignment:
Q  32 aaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 119  Q
    ||||||||||||||||||||||||||||||   | |||||| | ||||||||||||||||||||||||||| ||||||||||||||||    
T  1948202 aaaaagcatgcaacagatattcttggaccaacttgatttgcaactactctatgttcaacactcttgaatttgtcatttgttataagct 1948289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 297 - 489
Target Start/End: Complemental strand, 2029673 - 2029481
Alignment:
Q  297 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 396  Q
    |||||||||||| ||||||||||| |||||| || |||||  | ||||| |||| || ||| ||||| || ||||  | ||||||||| || ||||||||    
T  2029673 aacttgcctgcaaaagatcaccaacattaactacgagagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggaggccaccaat 2029574  T
Q  397 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 489  Q
    |||||||||||||||||||||||| |||  |   ||| |||| || || |||||||  || || |||||||||||||||| |||||| |||||    
T  2029573 atggtcttggagaagcactgtgaggaaatcattgtcacaatgctttgttgttcccacagtcaattctggttcaggacaaggaggataataatg 2029481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 297 - 492
Target Start/End: Complemental strand, 10768697 - 10768502
Alignment:
Q  297 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 396  Q
    |||||||||||| |||||| |||| |||||| |  |||||| | || || ||||  | ||| ||||| || || || | ||||||||| || ||||||||    
T  10768697 aacttgcctgcaaaagatctccaacattaactatgagagccccaggaacaggtgtaatatcaatccatttatcctgataaagaacttggaggccaccaat 10768598  T
Q  397 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgacc 492  Q
    |||||||||||||||||| ||||| |||  |  ||||||||| ||||| |||||||  || || |||||||||||||||| |||||| ||||||||    
T  10768597 atggtcttggagaagcacagtgaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatgacc 10768502  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 2055822 - 2055734
Alignment:
Q  31 gaaaaagcatgcaacagatattcttggaccat-tgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 119  Q
    |||||||||||||||||||||||||||||||  ||| ||| || |||||||||||| |||||||||||||||| ||||||||||||||||    
T  2055822 gaaaaagcatgcaacagatattcttggaccaactgt-attggcaagtactctatgtacaacactcttgaatttgtcatttgttataagct 2055734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 2051965 - 2051877
Alignment:
Q  31 gaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 119  Q
    ||||||||||||||| |||||||||||||||   | |||||| |||||||||||| |||||||||||||||| |||||||| |||||||    
T  2051965 gaaaaagcatgcaacggatattcttggaccaacttgatttgcaagtactctatgtacaacactcttgaatttgtcatttgtaataagct 2051877  T

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Target: chr8; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 2059026 - 2058938
Alignment:
Q  31 gaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 119  Q
    |||||||||||||||||||||||||||||||   | ||| || | |||||||||| |||||||||||||||| ||||||||||||||||    
T  2059026 gaaaaagcatgcaacagatattcttggaccaacttgattggcaattactctatgtacaacactcttgaatttgtcatttgttataagct 2058938  T

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Target: chr8; HSP #10
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 297 - 491
Target Start/End: Complemental strand, 2058197 - 2058003
Alignment:
Q  297 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 396  Q
    |||||||||| ||||||||||||| |||||| |  |||||  | ||||| |||| || ||| ||||| || ||||  | ||||||||| |||||||||||    
T  2058197 aacttgcctgaagaagatcaccaacattaactaggagagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggagaccaccaat 2058098  T
Q  397 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatgac 491  Q
    ||||||||| ||||||| ||| || |||  |  ||||||||| ||||| |||||||  || || |||||||| ||| ||| |||||| |||||||    
T  2058097 atggtcttgtagaagcattgtcaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcgggataagaaggataataatgac 2058003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 297 - 489
Target Start/End: Complemental strand, 2034232 - 2034040
Alignment:
Q  297 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 396  Q
    |||||||||||||||||||||| | || |||||  |||||  | ||||| |||| || ||| ||||| || || |  |  |||||||||||||||||||     
T  2034232 aacttgcctgcagaagatcaccgacatcaacaatgagagctccaggtacaggtgttatatcaatccatttgtcgtcatacagaacttgaagaccaccaac 2034133  T
Q  397 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 489  Q
    ||||||||| |||||||||||||| |||  |  ||||||||| || || ||||| |  || || |||||||||||||||| ||| ||||||||    
T  2034132 atggtcttgtagaagcactgtgaggaaatcattatcagaatgctttgttgttcctacagtcaattctggttcaggacaaggagggtagtaatg 2034040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 2034750 - 2034662
Alignment:
Q  31 gaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 119  Q
    |||||||||||| |||||||||||||| |||   |||||||| | |||||| |||||||||||||||||| | ||||||||||||||||    
T  2034750 gaaaaagcatgccacagatattcttgggccaacttcatttgcaactactctgtgttcaacactcttgaatctgtcatttgttataagct 2034662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 297 - 489
Target Start/End: Complemental strand, 2050964 - 2050772
Alignment:
Q  297 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 396  Q
    |||||||||||| ||||||||||| |||||| |  |||||  | | ||| |||| || ||| ||||| || ||||  | ||||||||| || ||||||||    
T  2050964 aacttgcctgcaaaagatcaccaacattaactatgagagctccagatacaggtgttatatcaatccatttatcttcataaagaacttggaggccaccaat 2050865  T
Q  397 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 489  Q
    ||||||||| |||||||||||||| |||  |  ||||||||| || || ||||| |  || || |||||||||||||||| |||||| |||||    
T  2050864 atggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggaggataataatg 2050772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 2038828 - 2038740
Alignment:
Q  31 gaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 119  Q
    |||||||||||| ||||||||||  |||||| | | ||| || |||||||| |||||||||||||||||| | ||||||||||||||||    
T  2038828 gaaaaagcatgctacagatattcgcggaccaattttattcgcaagtactctgtgttcaacactcttgaatctgtcatttgttataagct 2038740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 2048071 - 2047983
Alignment:
Q  31 gaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 119  Q
    |||||||| ||| |||||||||||||||||| | | |||||| |||||| | ||||||| |||||||||| | ||||||||||||||||    
T  2048071 gaaaaagcttgctacagatattcttggaccaattttatttgcaagtactttgtgttcaaaactcttgaatctgtcatttgttataagct 2047983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 297 - 489
Target Start/End: Complemental strand, 2055373 - 2055181
Alignment:
Q  297 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 396  Q
    |||||||||||| ||||||||||| |||||| |  |||||  | | ||| |||| || ||| ||||| || || |  | ||||||||| || ||||||||    
T  2055373 aacttgcctgcaaaagatcaccaacattaactattagagctccagatacaggtgttatatcaatccatttatcgtcataaagaacttggaggccaccaat 2055274  T
Q  397 atggtcttggagaagcactgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 489  Q
    ||||||||| |||||||||||||| |||  |  ||||||||| || || ||||| |  || || |||||||||||||||| ||| ||||||||    
T  2055273 atggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatg 2055181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 10769479 - 10769391
Alignment:
Q  31 gaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagct 119  Q
    |||||| ||||||||||||||||||||||||   | |||||| || ||||| || || |||||||||||||| ||||||||||||||||    
T  10769479 gaaaaaacatgcaacagatattcttggaccaacattatttgcaagaactctgtgctccacactcttgaatttgtcatttgttataagct 10769391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 297 - 422
Target Start/End: Complemental strand, 2047035 - 2046910
Alignment:
Q  297 aacttgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaat 396  Q
    ||||| |||||||||||||||||| |||||| |  ||||   | ||||| |||| || ||| ||||| || ||||  | ||||||||| |||||||| ||    
T  2047035 aacttacctgcagaagatcaccaacattaactatgagagatccaggtacaggtgctatatcaatccatttatcttcataaagaacttggagaccacctat 2046936  T
Q  397 atggtcttggagaagcactgtgagaa 422  Q
    ||||||||| ||||||||||| ||||    
T  2046935 atggtcttgtagaagcactgtcagaa 2046910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 48904981 - 48905070
Alignment:
Q  31 gaaaaagcatgcaacagatattcttggaccattgtcatttgccagtactctatgttcaacactcttgaatttatcatttgttataagctg 120  Q
    ||||||||||||| |||||||||||||||||   | |||||| | |||||| |||||||||||||| || || |||||||||||||||||    
T  48904981 gaaaaagcatgcagcagatattcttggaccaacttgatttgcaactactctgtgttcaacactcttaaacttgtcatttgttataagctg 48905070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 313 - 489
Target Start/End: Complemental strand, 16439346 - 16439170
Alignment:
Q  313 atcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaatatggtcttggagaagc 412  Q
    |||||| ||||||||||||||||||||  |||  || |||||||| |||||| | ||||  ||||||||||| ||||||||  |||| ||||| ||||||    
T  16439346 atcaccgatattaacaacaagagcctcatgtagaggaggtacatcaatccacatatctttatgaagaacttggagaccacctgtatgatcttgtagaagc 16439247  T
Q  413 actgtgagaaaactaccatcagaatgtttggtggttcccattgttaaatctggttcaggacaagcaggatagtaatg 489  Q
    || ||||  |||  | |||| | ||||||  |||||||||  ||||| || |||||||| || ||  ||||||||||    
T  16439246 accgtgatgaaatcaacatctgcatgttttatggttcccaaagttaactcgggttcagggcaggccagatagtaatg 16439170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 16414327 - 16414372
Alignment:
Q  75 gtactctatgttcaacactcttgaatttatcatttgttataagctg 120  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||    
T  16414327 gtactctatgatgaacactcttgaatttatcatttgtgataagctg 16414372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 301 - 414
Target Start/End: Original strand, 16418965 - 16419078
Alignment:
Q  301 tgcctgcagaagatcaccaatattaacaacaagagcctcgggtaccggtggtacatcgatccacttttcttggtgaagaacttgaagaccaccaatatgg 400  Q
    |||||||||||| |||||||| |||||||  |||||| ||| ||  || |||||||| |||||| | || |  |||||||| || || ||||| |||||     
T  16418965 tgcctgcagaaggtcaccaatgttaacaattagagccgcggatagaggaggtacatcaatccacatgtccttatgaagaacctggaggccacctatatga 16419064  T
Q  401 tcttggagaagcac 414  Q
    ||||| ||||||||    
T  16419065 tcttgtagaagcac 16419078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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