View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5065-Insertion-4 (Length: 915)
Name: NF5065-Insertion-4
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065-Insertion-4 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 11787829 - 11788291
Alignment:
| Q |
11 |
ccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtgttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11787829 |
ccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtgttc |
11787928 |
T |
|
| Q |
111 |
aagctttcggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgc |
210 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
11787929 |
aagctttcggggcggatcaatttgacgaaaaacatcctaaggaacatagagctagaagctcattctttaattggtggtattttacaatggttgcaggtgc |
11788028 |
T |
|
| Q |
211 |
ctcggcaacacttttaatcttgagttatatacaagataattatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgattgtt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11788029 |
ctcggcaacacttttaatcttgagttatatacaagataactatagttgggttgttggatttggaataccttgtgttgttatgatcattgctttgattgtt |
11788128 |
T |
|
| Q |
311 |
ttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatttgttgtgactgcaagaaatt |
410 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
11788129 |
ttcttgattggaactatcacatataggtttaacatcaatgataataacaagagtccctttcttagaattggtcgtgtattcgtcgtggctgcaagaaatt |
11788228 |
T |
|
| Q |
411 |
ggaaaaataccttatcaacaacggatattcaagaggaacatgatggactacttcgccgccatc |
473 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11788229 |
ggaaaaataccttatcaacaacggatattgaagaggaacatgatggactacttcgccgccatc |
11788291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 11799996 - 11800458
Alignment:
| Q |
11 |
ccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtgttc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11799996 |
ccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtgttc |
11800095 |
T |
|
| Q |
111 |
aagctttcggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgc |
210 |
Q |
| |
|
||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
11800096 |
aagctttcggggcggatcaatttgacgaaaaacatcctaaggaacatagagctagaagctcattctttaattggtggtattttacaatggttgcaggtgc |
11800195 |
T |
|
| Q |
211 |
ctcggcaacacttttaatcttgagttatatacaagataattatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgattgtt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11800196 |
ctcggcaacacttttaatcttgagttatatacaagataactatagttgggttgttggatttggaataccttgtgttgttatgatcattgctttgattgtt |
11800295 |
T |
|
| Q |
311 |
ttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatttgttgtgactgcaagaaatt |
410 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| |
|
|
| T |
11800296 |
ttcttgattggaactatcacatataggtttaacatcaatgataataacaagagtccctttcttagaattggtcgtgtattcgtcgtggctgcaagaaatt |
11800395 |
T |
|
| Q |
411 |
ggaaaaataccttatcaacaacggatattcaagaggaacatgatggactacttcgccgccatc |
473 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11800396 |
ggaaaaataccttatcaacaacggatattgaagaggaacatgatggactacttcgccgccatc |
11800458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 11783998 - 11784460
Alignment:
| Q |
11 |
ccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtgttc |
110 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||||| || ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11783998 |
ccttccattacaatttattctcctcagtcacaagtaatgttattcttcttctcactctatctagttgccattggacaaggtggacataaaccttgtgttc |
11784097 |
T |
|
| Q |
111 |
aagctttcggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11784098 |
aagctttcggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgc |
11784197 |
T |
|
| Q |
211 |
ctcggcaacacttttaatcttgagttatatacaagataattatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgattgtt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11784198 |
ctcggcaacacttttaatcttgagttatatacaagataactatagttgggttcttggatttggaataccttgtgttgtaatgatcattgctttgattgtt |
11784297 |
T |
|
| Q |
311 |
ttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatttgttgtgactgcaagaaatt |
410 |
Q |
| |
|
|||||| |||||||||| || |||||||||||||| || ||||| |||| |||| ||||||||||||||||| |||||||||| | ||| |||||||| |
|
|
| T |
11784298 |
ttcttgcttggaacaatgacctataggtttaacattaaggataatgacaattgtccttttcttagaattggtcgagtatttgttgcggctgtaagaaatt |
11784397 |
T |
|
| Q |
411 |
ggaaaaataccttatcaacaacggatattcaagaggaacatgatggactacttcgccgccatc |
473 |
Q |
| |
|
|| ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
11784398 |
ggcgaaataccttatcaacgacggatattgaagaggaacatgatggactacgtcgccgccatc |
11784460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 486 - 915
Target Start/End: Original strand, 11788475 - 11788908
Alignment:
| Q |
486 |
cactgtagtaatcaattctagcattgaacttaattctcattgttgattattgtggttgccatctcgaagcatctcaaagcaatttacggtatatataaga |
585 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11788475 |
cactgtagtaatcaattcgagcattgaacttaattctcattgttgattattgtggttgccatctcgaagcatctcgaagcaatttacggtatatataaga |
11788574 |
T |
|
| Q |
586 |
tataaaagttagttatactgacaagttagttacaccagtttttcattatcaatataatttgcattttactttcgtcttatcaatagcttttgtcaaga-- |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
11788575 |
tataaaagttagttatactgacaagttagttacaccagtttttcattatcaatataatttgcattttactttcgtcttatcagtaacttttctcaagaat |
11788674 |
T |
|
| Q |
684 |
--aataatatggtatcatatagccaggttacaaccaagtgattatatataagcgattcctatcaaaaaagataaaataatgtcaaaatgttttc--atat |
779 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
11788675 |
ataataatatggtatcatacagcccggttacaaccaagtgattatatataagcgattcctatcaaaaaagataaaataatgtcaaaatattttcatatat |
11788774 |
T |
|
| Q |
780 |
atgctaaaactggtttcatgagttatccggacgtgcttatggaaatatactgaaaacaacttatggatttgtcataaactattttggcttggcctatata |
879 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
11788775 |
atgctaaaactggtttcataagttatctggacgtccttatggaaatatactgaaaacaacttatggatttgtcataaactattttgacttggcc--tata |
11788872 |
T |
|
| Q |
880 |
ttttctacattttcagcttcctcaataaggcattgc |
915 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
11788873 |
ttttctacatttgtagcttcctcaataaggcattgc |
11788908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 486 - 915
Target Start/End: Original strand, 11800642 - 11801075
Alignment:
| Q |
486 |
cactgtagtaatcaattctagcattgaacttaattctcattgttgattattgtggttgccatctcgaagcatctcaaagcaatttacggtatatataaga |
585 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11800642 |
cactgtagtaatcaattcgagcattgaacttaattctcattgttgattattgtggttgccatctcgaagcatctcgaagcaatttacggtatatataaga |
11800741 |
T |
|
| Q |
586 |
tataaaagttagttatactgacaagttagttacaccagtttttcattatcaatataatttgcattttactttcgtcttatcaatagcttttgtcaaga-- |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
11800742 |
tataaaagttagttatactgacaagttagttacaccagtttttcattatcaatataatttgcattttactttcgtcttatcagtaacttttctcaagaat |
11800841 |
T |
|
| Q |
684 |
--aataatatggtatcatatagccaggttacaaccaagtgattatatataagcgattcctatcaaaaaagataaaataatgtcaaaatgttttc--atat |
779 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
11800842 |
ataataatatggtatcatacagcccggttacaaccaagtgattatatataagcgattcctatcaaaaaagataaaataatgtcaaaatattttcatatat |
11800941 |
T |
|
| Q |
780 |
atgctaaaactggtttcatgagttatccggacgtgcttatggaaatatactgaaaacaacttatggatttgtcataaactattttggcttggcctatata |
879 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
11800942 |
atgctaaaactggtttcataagttatctggacgtccttatggaaatatactgaaaacaacttatggatttgtcataaactattttgacttggcc--tata |
11801039 |
T |
|
| Q |
880 |
ttttctacattttcagcttcctcaataaggcattgc |
915 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
11801040 |
ttttctacatttgtagcttcctcaataaggcattgc |
11801075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 466
Target Start/End: Original strand, 11697808 - 11698266
Alignment:
| Q |
8 |
cttccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtg |
107 |
Q |
| |
|
|||||||| |||||| ||||||| |||| |||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
11697808 |
cttccttcactcacatcttgttctactcaatcacaagtaatcttattcttcatctcactctatctagtagccattggacaaggtggacataaaccttgtg |
11697907 |
T |
|
| Q |
108 |
ttcaagctttcggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcagg |
207 |
Q |
| |
|
|||||||||||||||| || |||||||| |||||| ||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11697908 |
ttcaagctttcggggctgaccaattcgacgaaaaatatcctaaggagcacaaagctagaagctcattctttaattggtggtattttactatggttgcagg |
11698007 |
T |
|
| Q |
208 |
tgcctcggcaacacttttaatcttgagttatatacaagataattatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgatt |
307 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||| | |||||||| || |||||| |
|
|
| T |
11698008 |
tgccgcggcaacactttcgatcttgacttatatacaagataactatagttgggttcttggatttggaatcccttgtgttataatgatcatagccttgatt |
11698107 |
T |
|
| Q |
308 |
gttttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatttgttgtgactgcaagaa |
407 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||||| || |||| |||||||||| |||||||||||||||||||||||||||| | |||| |||| |
|
|
| T |
11698108 |
gttttcttgcttggaacaatgacctataggtttaacattaaggataaagacaagagtccttttcttagaattggtcgtgtatttgttgcggctgcgagaa |
11698207 |
T |
|
| Q |
408 |
attggaaaaataccttatcaacaacggatattcaagaggaacatgatggactacttcgc |
466 |
Q |
| |
|
||||| ||||| |||| ||||| ||||||||| |||||||| |||||||||||||||| |
|
|
| T |
11698208 |
attggcaaaattccttgtcaacgacggatattgaagaggaatgtgatggactacttcgc |
11698266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 18 - 468
Target Start/End: Original strand, 11707526 - 11707976
Alignment:
| Q |
18 |
tcacattttgttctcctcagtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtgttcaagcttt |
117 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11707526 |
tcacattttgttctcctcaatcacaagtaatcttattcttcatctcactctatctagttgccattggacaaggtggacataaaccttgtgttcaagcttt |
11707625 |
T |
|
| Q |
118 |
cggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcaggtgcctcggca |
217 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| | | ||| |
|
|
| T |
11707626 |
tggggctgatcaattcgatgaaaaacatccaaaagagcacgaagctagaagctcattctttaattggtggtattttactatgattgcaggttgcacagca |
11707725 |
T |
|
| Q |
218 |
acacttttaatcttgagttatatacaagataattatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgattgttttcttga |
317 |
Q |
| |
|
|||||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||| |
|
|
| T |
11707726 |
acacttacgatcttgaactatatacaagataacattagttgggttcttggatttggaatcccttgtgttgtaatgatcatcgctttgattgtttttttgc |
11707825 |
T |
|
| Q |
318 |
ttggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatttgttgtgactgcaagaaattggaaaaa |
417 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||| |||||||||||||| |||||||||||||||||||||| | | || |||||||||| ||| |
|
|
| T |
11707826 |
ttggaacaaggacatataggtttaacattaaggttaatgacaagagtccctttattagaattggtcgtgtatttgtcgcggctataagaaattggcgaaa |
11707925 |
T |
|
| Q |
418 |
taccttatcaacaacggatattcaagaggaacatgatggactacttcgccg |
468 |
Q |
| |
|
|| |||||||||||||||| || |||| ||| |||||| ||||||||||| |
|
|
| T |
11707926 |
tagcttatcaacaacggattttgaagaagaatgtgatgggctacttcgccg |
11707976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 11676293 - 11676749
Alignment:
| Q |
8 |
cttccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtg |
107 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
11676293 |
cttccttctctcacatcctgttctcctgagtcacaagtaatcttatttttcatctcactttatctagtagccataggacaaggtggacataaaccttgtg |
11676392 |
T |
|
| Q |
108 |
ttcaagctttcggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcagg |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
11676393 |
ttcaagctttcggggcggatcaattcgacgaaaaacatcctaaggagcatagagctagaagctctttctttaattggtggtattttactatgattgcagg |
11676492 |
T |
|
| Q |
208 |
tgcctcggcaacacttttaatcttgagttatatacaagataattatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgatt |
307 |
Q |
| |
|
| | | ||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
11676493 |
ttgcacatcaatacttacaatcttgaactatatacaagataacattagttgggttcttggatttggaatcccttgtgttgtaatgatcattgctttgatt |
11676592 |
T |
|
| Q |
308 |
gttttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatttgttgtgactgcaagaa |
407 |
Q |
| |
|
||||| | | ||||||||| ||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
11676593 |
gttttttggcttggaacaaggacatataggtttagcattaaggataatgacaagagtccctttcttagaattggtcgtgtatttgtcacagctataagaa |
11676692 |
T |
|
| Q |
408 |
attggaaaaataccttatcaacaacggatattcaagaggaacatgatggactacttc |
464 |
Q |
| |
|
||||| ||| |||||||||||||||||| || |||| ||| |||||||||||||| |
|
|
| T |
11676693 |
attggcgaaagaccttatcaacaacggattttgaagaagaatgtgatggactacttc |
11676749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 8 - 464
Target Start/End: Original strand, 11684572 - 11685028
Alignment:
| Q |
8 |
cttccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtg |
107 |
Q |
| |
|
|||||||| |||||| ||||||||| |||||||||| |||||||| ||||||||||| |||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
11684572 |
cttccttctctcacatcctgttctcctgagtcacaagtaatcttatttttcatctcactttatctagtagccataggacaaggtggacataaaccttgtg |
11684671 |
T |
|
| Q |
108 |
ttcaagctttcggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcagg |
207 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
11684672 |
ttcaagctttcggggcggatcaattcgacgaaaaacatcctaaggagcatagagctagaagctctttctttaattggtggtattttactatgattgcagg |
11684771 |
T |
|
| Q |
208 |
tgcctcggcaacacttttaatcttgagttatatacaagataattatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgatt |
307 |
Q |
| |
|
| | | ||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
11684772 |
ttgcacatcaatacttacaatcttgaactatatacaagataacattagttgggttcttggatttggaatcccttgtgttgtaatgatcattgctttgatt |
11684871 |
T |
|
| Q |
308 |
gttttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatttgttgtgactgcaagaa |
407 |
Q |
| |
|
||||| | | ||||||||| ||||||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
11684872 |
gttttttggcttggaacaaggacatataggtttagcattaaggataatgacaagagtccctttcttagaattggtcgtgtatttgtcacagctataagaa |
11684971 |
T |
|
| Q |
408 |
attggaaaaataccttatcaacaacggatattcaagaggaacatgatggactacttc |
464 |
Q |
| |
|
||||| ||| |||||||||||||||||| || |||| ||| |||||||||||||| |
|
|
| T |
11684972 |
attggcgaaagaccttatcaacaacggattttgaagaagaatgtgatggactacttc |
11685028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 626 - 718
Target Start/End: Original strand, 11784788 - 11784882
Alignment:
| Q |
626 |
tttcattatcaatataatttgcattttactttcgtcttatcaatagcttttgtcaaga----aataatatggtatcatatagccaggttacaaccaa |
718 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
11784788 |
tttcattatcaatataatttgcattttattttcctcttatcaatagcttttgccaagaatataataatatggtatc--atagccaggttacaaccaa |
11784882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 495 - 554
Target Start/End: Original strand, 11784650 - 11784709
Alignment:
| Q |
495 |
aatcaattctagcattgaacttaattctcattgttgattattgtggttgccatctcgaag |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11784650 |
aatcaattctagcattgaacttaattctcattgttgattattgtgggtgccatctcgaag |
11784709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 814 - 914
Target Start/End: Original strand, 11698990 - 11699088
Alignment:
| Q |
814 |
gcttatggaaatatactgaaaacaacttatggatttgtcataaactattttggcttggcctatatattttctacattttcagcttcctcaataaggcatt |
913 |
Q |
| |
|
|||||| |||||| | |||||||| ||||||||| ||||||||||||||||| |||||| | ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11698990 |
gcttatagaaataaagtgaaaacagcttatggatctgtcataaactattttgacttggc--ttgtattttctacattttcagcttcctcaacaaggcatt |
11699087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 723 - 785
Target Start/End: Complemental strand, 29374018 - 29373956
Alignment:
| Q |
723 |
ttatatataagcgattcctatcaaaaaagataaaataatgtcaaaatgttttcatatatgcta |
785 |
Q |
| |
|
|||||||||||| ||| |||| | | ||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
29374018 |
ttatatataagctatttctataacagaagataaaataatgtcaaaatgtattcatataagcta |
29373956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 878 - 915
Target Start/End: Original strand, 11785284 - 11785321
Alignment:
| Q |
878 |
tattttctacattttcagcttcctcaataaggcattgc |
915 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
11785284 |
tattttctacatttgcagcttcctcaacaaggcattgc |
11785321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 447
Target Start/End: Original strand, 19580 - 20019
Alignment:
| Q |
8 |
cttccttccatcacattttgttctcctcagtcacaagttatcttattcttcatctcactctatctaattgccattggacaaggtggacataaaccttgtg |
107 |
Q |
| |
|
|||||||| || ||| ||||||| |||| |||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
19580 |
cttccttcactcgcatcttgttctactcaatcacaagtaatcttattcttcatttcactctatctagttgccattggacaaggtggacataaaccttgtg |
19679 |
T |
|
| Q |
108 |
ttcaagctttcggggcagatcaattcgatgaaaaacatcctaaggagcatagagctagaagctcattctttaactggtggtattttactatggttgcagg |
207 |
Q |
| |
|
|||||||||| ||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19680 |
ttcaagcttttggggctgatcaattcgacgaaaaatatccggaggagcatagagctagaagctcattctttaattggtggtattttactatggttgcagg |
19779 |
T |
|
| Q |
208 |
tgcctcggcaacacttttaatcttgagttatatacaagataattatagttgggttcttggatttggaataccttgtgttgttatgatcattgctttgatt |
307 |
Q |
| |
|
||| ||||||||||| ||||||| |||||| |||||||| ||||| |||||||||||||||||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
19780 |
ggccacggcaacacttccgatcttgacttatattcaagataactatagctgggttcttggatttggaataccttgtgttataatgatcattgccttgatt |
19879 |
T |
|
| Q |
308 |
gttttcttgattggaacaatcacatataggtttaacatcaattataataacaagagtccctttcttagaattggtcgtgtatttgttgtgactgcaagaa |
407 |
Q |
| |
|
|||||||| | ||||||| ||||||||||||||||| || ||||||| |||||||| ||||||||||| ||||||||||| | || ||| ||||| |
|
|
| T |
19880 |
attttcttgctcggaacaaggacatataggtttaacattaaggataataataagagtccttttcttagaatcggtcgtgtattcgctgcagctgtaagaa |
19979 |
T |
|
| Q |
408 |
attggaaaaataccttatcaacaacggatattcaagagga |
447 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| ||||||| |
|
|
| T |
19980 |
attggcgaaataccttatcaactacggatattgaagagga |
20019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 717 - 845
Target Start/End: Original strand, 38462214 - 38462343
Alignment:
| Q |
717 |
aagtgattatatataagcgattcctatcaaaaaagataaaataatgtcaaaatgttttcatatatgcta-aaactggtttcatgagttatccggacgtgc |
815 |
Q |
| |
|
||||| |||| ||||||| ||| |||| |||||||||||||| |||||| ||||||||||||||||| |||||| |||||| || ||||| || |
|
|
| T |
38462214 |
aagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatatatgctataaactgttttcataagctatccaagatagc |
38462313 |
T |
|
| Q |
816 |
ttatggaaatatactgaaaacaacttatgg |
845 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
38462314 |
ttatggaaataagctgaaaacaacttatgg |
38462343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 816 - 859
Target Start/End: Complemental strand, 13709860 - 13709817
Alignment:
| Q |
816 |
ttatggaaatatactgaaaacaacttatggatttgtcataaact |
859 |
Q |
| |
|
|||| |||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
13709860 |
ttattgaaataaactgaaaacaacttatggacttgtcataaact |
13709817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 821 - 859
Target Start/End: Complemental strand, 49586968 - 49586930
Alignment:
| Q |
821 |
gaaatatactgaaaacaacttatggatttgtcataaact |
859 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
49586968 |
gaaataaactgaaaacaacttatggatatgtcataaact |
49586930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 49587042 - 49586985
Alignment:
| Q |
728 |
tataagcgattcctatcaaaaaagataaaataatgtcaaaatgttttcatatatgcta |
785 |
Q |
| |
|
||||||| ||| |||| | |||||||||||||| |||||| |||||||||||| |||| |
|
|
| T |
49587042 |
tataagctatttctataacaaaagataaaataaagtcaaactgttttcatataagcta |
49586985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 723 - 863
Target Start/End: Original strand, 12361131 - 12361272
Alignment:
| Q |
723 |
ttatatataagcgattcctatcaaaaaagataaaataatgtcaaaatgttttcatatatgcta-aaactggtttcatgagttatccggacgtgcttatgg |
821 |
Q |
| |
|
||||||||||| ||| |||| || ||||||||||| | |||||| |||||||||||| |||| || ||| |||||| |||||| | | | ||| |||| |
|
|
| T |
12361131 |
ttatatataagttatttctataaataaagataaaatgaagtcaaattgttttcatataagctataagctgttttcataagttattcaggagagctaatgg |
12361230 |
T |
|
| Q |
822 |
aaatatactgaaaacaacttatggatttgtcataaactattt |
863 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||||| |
|
|
| T |
12361231 |
aaataagttgaaaacagcttatggacatgtcataagctattt |
12361272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 728 - 780
Target Start/End: Complemental strand, 5006635 - 5006583
Alignment:
| Q |
728 |
tataagcgattcctatcaaaaaagataaaataatgtcaaaatgttttcatata |
780 |
Q |
| |
|
||||||| |||||||| | |||||||||||||| |||||| |||||||||||| |
|
|
| T |
5006635 |
tataagctattcctataacaaaagataaaataaagtcaaactgttttcatata |
5006583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 778
Target Start/End: Complemental strand, 32098439 - 32098384
Alignment:
| Q |
723 |
ttatatataagcgattcctatcaaaaaagataaaataatgtcaaaatgttttcata |
778 |
Q |
| |
|
|||||||||||| ||| |||| | |||||||||||||| |||||| |||||||||| |
|
|
| T |
32098439 |
ttatatataagctatttctataacaaaagataaaataaagtcaaagtgttttcata |
32098384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 793 - 856
Target Start/End: Original strand, 39621961 - 39622024
Alignment:
| Q |
793 |
tttcatgagttatccggacgtgcttatggaaatatactgaaaacaacttatggatttgtcataa |
856 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
39621961 |
tttcataagttatccggacaagcttaaggaaataagctgaaaacaatttatgaatttgtcataa |
39622024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 723 - 785
Target Start/End: Complemental strand, 17952832 - 17952770
Alignment:
| Q |
723 |
ttatatataagcgattcctatcaaaaaagataaaataatgtcaaaatgttttcatatatgcta |
785 |
Q |
| |
|
|||||||||||| ||| |||| | |||||||||||||| |||||| | |||||||||| |||| |
|
|
| T |
17952832 |
ttatatataagctatttctataacaaaagataaaataaagtcaaactattttcatataagcta |
17952770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 728 - 785
Target Start/End: Complemental strand, 281974 - 281917
Alignment:
| Q |
728 |
tataagcgattcctatcaaaaaagataaaataatgtcaaaatgttttcatatatgcta |
785 |
Q |
| |
|
||||||| |||||||| | |||||||||||||| ||||| |||||||||||| |||| |
|
|
| T |
281974 |
tataagctattcctataacaaaagataaaataaagtcaacttgttttcatataagcta |
281917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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