View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5065-Insertion-5 (Length: 678)

Name: NF5065-Insertion-5
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5065-Insertion-5
NF5065-Insertion-5
[»] chr1 (1 HSPs)
chr1 (7-678)||(5313276-5313947)


Alignment Details
Target: chr1 (Bit Score: 644; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 644; E-Value: 0
Query Start/End: Original strand, 7 - 678
Target Start/End: Original strand, 5313276 - 5313947
Alignment:
Q  7 agtaactgacggcgtcgatttctgtttcgtcgaactcaccgttctattcatcaacggcgagttagttcttctcggcggcgacgaaaacgacgaagaagaa 106  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313276 agtaactgacggcgtcgatttctgtttcgtcgaattcaccgttctattcaccaacggcgagttagttcttctcggcggcgacgaaaacgacgaagaagaa 5313375  T
Q  107 gaagatgaatacatgtaacgagaagtaacttctcgcgctttcggttttcgcacaattgcattgtccgattcagaaggtaacaacggtggcctcgttggtg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313376 gaagatgaatacatgtaacgagaagtaacttctcgcgctttcggttttcgtacaattgcattgtccgattcagaaggtaacaacggtggcctcgttggtg 5313475  T
Q  207 ttggtgctctcttcgtgtttttcgtcgtcgtggttgttgaaatcgcagtaaccattttcttttctttcaaaaatctaatacggaatgtacgaaacgaaat 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  5313476 ttggtgctctcttcgtgtttttcgtcgtcgtggttgttgaaatcgcagtaaccattttcttttctttcaaaaatctaatacgaaatgtacgaaacgaaat 5313575  T
Q  307 tcatcactcatcacactagaaacactaccaaccctagaaatttaacgtggagagtaatgtagcagagaaaaatttgcgagcgtgattttttcggtatgaa 406  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313576 tcatcactcatcacgctagaaacattaccaaccctagaaatttaacgtggagagtaatgtagcagagaaaaatttgcgagcgtgattttttcggtatgaa 5313675  T
Q  407 ttaatgaagaggttgaaaaatgagagcgaaaatttgaccgttacgttgttatggtgtgaagagaagagtgtaactgtagttcgtattagtgtgagagagt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313676 ttaatgaagaggttgaaaaatgagagcgaaaatttgaccgttacgttgttatggtgtgaagagaagagtgtaactgtagttcgtattagtgtgagagagt 5313775  T
Q  507 cacacgcagcgtgattgtggttttggatttgagaaaaattaacaccgaaaatgtgaaggtggaaggtgaggtaccagaaagagtgatgtcaaaattgtac 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313776 cacacgcagcgtgattgtggttttggatttgagaaaaattaacaccgaaaatgtgaaggtggaaggtgaggtaccagaaagagtgatgtcaaaattgtac 5313875  T
Q  607 acacgtacgcgcgttgttgatgagaattaatgcactcgccgtgacttcagttcttctttctttttccagggg 678  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5313876 acacgtacgcgcgttgttgatgagaattaatgcactcgccgtgacttcagttcttctttctttttctagggg 5313947  T

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