View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065-Insertion-6 (Length: 605)
Name: NF5065-Insertion-6
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 8 - 605
Target Start/End: Original strand, 53447003 - 53447600
Alignment:
| Q |
8 |
aatagtgaataccgcaatgcattcagaacaaagtcttatgttgacatatgcaacaaagctcaaggatatggaattgaaaacacaagcatgagatcatcac |
107 |
Q |
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| T |
53447003 |
aatagtgaataccgcaatgcattcagaacaaagtcttatgttgacatatgtaacaaagctcaaggatatggaattgaaaacacaagcatgagatcatcac |
53447102 |
T |
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| Q |
108 |
actctaactcctgttcgacttcttcttcttctttgctagaacctagacaagaaattgttacaaacatgatcaatagctttaaggtgcatcatcttctagt |
207 |
Q |
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| T |
53447103 |
actctaactcctgttcgacttcttcttcttctttgctagaacctagacaagaaattgttacaaacatgatcaagagctttaaggtgcatcatcttctagt |
53447202 |
T |
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| Q |
208 |
ggactactttgaagccagcttagaagcatatctttgttgcgacaaaatccttcaaggtgttcgtcaaactagatttggttatggaaaagtcataaacgta |
307 |
Q |
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| T |
53447203 |
ggactactttgaagccagcttagaagcatatctttgttgcgacaaaatccttcaaggtgttcgtcaaactagatttggttatggaaaagtcataaacgta |
53447302 |
T |
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| Q |
308 |
gttaataagttaagccaaagagtcattgaatatgacactgacacaaatgtagacacaaacgtcaatgacaatattatctatgaagagcttgtttcatctg |
407 |
Q |
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| T |
53447303 |
gttaataagttaagccaaagagtcgttgaatatgacactgacacagatgtggacacaaacgtcaatgacaatattatctatgaagagcttgtttcatctg |
53447402 |
T |
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| Q |
408 |
ttattaacaactctttgtgtttgtccaataatattattaatttccgcgatattcaagaaaaacacatagtgctccttaacagacttaactcaaagagatt |
507 |
Q |
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| T |
53447403 |
ttattaacaactctttgtgtttgtccaataatattattaatttctgcgatattcaagaaaaacacatagcgctccttaacagacttaactcaaagagatt |
53447502 |
T |
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| Q |
508 |
gaaactcaaaagaagaataacaataaagaggttatgcaagaaagttggaggaatcggtttagtcgtttcagaaaccgctcttttggtggctttgttag |
605 |
Q |
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| T |
53447503 |
gaaactcaaaagaagaataacaataaagaggttatgcaagaaagttggagggatcggtttagtcgtttcagaaaccgctcttttggtggctttgttag |
53447600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 8357645 - 8357724
Alignment:
| Q |
185 |
tttaaggtgcatcatcttctagtggactactttgaagccagcttagaagcatatctttgttgcgacaaaatccttcaagg |
264 |
Q |
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| T |
8357645 |
tttaaggtgcatcatcttctagttgactatttcgaagctagcttagaagcatgtcgttgttgtgacacaatccttgaagg |
8357724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 8357465 - 8357505
Alignment:
| Q |
26 |
gcattcagaacaaagtcttatgttgacatatgcaacaaagc |
66 |
Q |
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| T |
8357465 |
gcatttagaacaaagtcttatattgaaatatgcaacaaagc |
8357505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 28594125 - 28594080
Alignment:
| Q |
27 |
cattcagaacaaagtcttatgttgacatatgcaacaaagctcaagg |
72 |
Q |
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| T |
28594125 |
catttagaacaaagtcttatattgaaatatgcaacaaagcacaagg |
28594080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 28593941 - 28593861
Alignment:
| Q |
184 |
ctttaaggtgcatcatcttctagtggactactttgaagccagcttagaagcatatctttgttgcgacaaaatccttcaagg |
264 |
Q |
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| T |
28593941 |
ctttaaggtgcatgatcttctagttaactatttcgatgctagcttagaagcaagtcgttgttgtgacacaatccttgaagg |
28593861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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