View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065-Insertion-7 (Length: 570)
Name: NF5065-Insertion-7
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 131 - 457
Target Start/End: Complemental strand, 5955062 - 5954741
Alignment:
| Q |
131 |
gagaaagaatgaaagttgaataaagggtaagagaaatcaaccaacaccacaatggttcagcgaattggggcaaaaaccattgtagaaccctaaattgatg |
230 |
Q |
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| T |
5955062 |
gagaaagaatgaaagttgaataaagggtaagagaaatcaaccaacaccacaatggttcagcgaattggggcaaaaaccattgtagaaccctaaattgatg |
5954963 |
T |
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| Q |
231 |
tttagcatgtggatgaagaaggtagcatttgaaggaatgaaaccctaatgcggagatgatgaagaaagtggtggtgagatcttggtagatcgtggttgaa |
330 |
Q |
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| T |
5954962 |
tttagcatgtggatgaagaaggtagcatttgaaggaatgaaaccctaatgcggagatgatgaagaaagtggtggtgagatcttgatagatcgtggttgaa |
5954863 |
T |
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| Q |
331 |
gaaaccgatacaaatgtgaatgaatgcatacaaaaactacaaatatacaaataataacaagattgaacaagatattaactcatcaatgtaatgtaactcc |
430 |
Q |
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| T |
5954862 |
gaaaccgatacaaatgtgaatgaatgcatacaaaaactacaaatatacaaataataacaagattgaacaagatattaactcatcaat-----gtaactcc |
5954768 |
T |
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| Q |
431 |
aatactttgaaaggagaaggtataaaa |
457 |
Q |
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| T |
5954767 |
aatactttgaatagagaaggtagaaaa |
5954741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 5955186 - 5955137
Alignment:
| Q |
7 |
aaaaactatacaaacccagaatttcaatttcaagtttgaacaagtgggtc |
56 |
Q |
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| T |
5955186 |
aaaaactatacaaacccagaatttcaatttcaagtttgaacaagtgggtc |
5955137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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