View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065-Insertion-8 (Length: 521)
Name: NF5065-Insertion-8
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 145 - 393
Target Start/End: Complemental strand, 30744297 - 30744048
Alignment:
| Q |
145 |
caagaatcaaatttaaactattatcatcaatttgtcatttggttaatctccttaattatttgagcacaattggttgattaacactccttgatgtttagat |
244 |
Q |
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| T |
30744297 |
caagaatcaaatttaaattattatcatcaatttgtcatttggttaatctcgttaactatttgagcacaattgattggttaacactccttgatgtttagat |
30744198 |
T |
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| Q |
245 |
acacacaaggaaataattttcat-aaatgtgaaatcaannnnnnnaattattaaaagatgtaccgactccgtaccaaattgttggttttagnnnnnnnnn |
343 |
Q |
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| T |
30744197 |
acatacaaggaattaattttcatgaaatgtgaaatcaatttttttaattattaaaagatgtactgactccgtaccaaattgttggttttagaaaaaaaaa |
30744098 |
T |
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| Q |
344 |
tttgtttaaaattataagtcgcatacaatatcaatgaaatattaatttta |
393 |
Q |
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| T |
30744097 |
attgtctaaaattataagtcgcatacaatatcaatgaaatattaatttta |
30744048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 460 - 521
Target Start/End: Complemental strand, 30743981 - 30743920
Alignment:
| Q |
460 |
catacaattaatgaaggacaattttgtaaaatatcttactcatcccatcaattgggatccga |
521 |
Q |
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| T |
30743981 |
catacaattatggaaggacaattttgtaaaatatcttactcatcccatcaattgggatccga |
30743920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 30744350 - 30744309
Alignment:
| Q |
8 |
gaagtcaggtaaaccttcgccaatcattcaaaccatgtccta |
49 |
Q |
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| T |
30744350 |
gaagtcaggtaaaccttcgccaatcattcaaaccatgtccta |
30744309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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