View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065-Insertion-9 (Length: 469)
Name: NF5065-Insertion-9
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065-Insertion-9 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 8 - 469
Target Start/End: Complemental strand, 28104522 - 28104061
Alignment:
| Q |
8 |
cggaattgtgttcaaaattacaaactacatgagccgataaacagccaatgttcaaataaagcatatgacagatataccacgctcatttgaaacagaacaa |
107 |
Q |
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| T |
28104522 |
cggaattgtgttcaaaattacaaactacatgagccgataaacagccaatgttcaaataaagcatatgacagatataccaccctcatttgaaacagaacaa |
28104423 |
T |
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| Q |
108 |
caagcgaaatttccccaaagccaaaaacaaagcctaataacactaagccacaaaaaggcatcaaaagctaaatactaacagaacaaagctctgcagaagt |
207 |
Q |
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| T |
28104422 |
caagcgaaatttccccacagccaaaaacaaagcctaataacactaagccacaaaaaggcatcaaaagctaaatactaacagaacaaagctctgcagaagt |
28104323 |
T |
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| Q |
208 |
cacaaaaccgtagcaaaaaatatagcagccataaaatgaattgcagcaagaacaaaaagccactgtgcagtacaaaatctgctgaccaaaaaccaccgtt |
307 |
Q |
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| T |
28104322 |
cacaaaaccgtagcaaaaaatatagcagccataaaatgaattgcagcaagaacaaaaagccactgtgcagtacaaaatctgctgaccaaaaaccaccgtt |
28104223 |
T |
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| Q |
308 |
catagccaaacctgccaacacaccacaccaccgctcaaaaacaaaattggcacaaccgtccaaaaggatttggagtgaccaggaaaataaaccaaggcag |
407 |
Q |
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| T |
28104222 |
catagccaaacctgccaacacaccacaccaccgctcaaaaacaaaactggcacaaccgtccaaaaggatttggagtgaccaggaaaataaaccaaggcag |
28104123 |
T |
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| Q |
408 |
caaaacgcaaaaagaaatacagcagaacaccactgactcgaataacacaaactgttgcagca |
469 |
Q |
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| T |
28104122 |
caaaacgcaaaaagaaatacagcagaacaccactgactcgaataacacaaactgatgcagca |
28104061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 26 - 469
Target Start/End: Complemental strand, 26641427 - 26640987
Alignment:
| Q |
26 |
tacaaactacatgagccgataaacagccaatgttcaaataaagcatatgacagatataccacgctcatttgaaacagaacaacaagcgaaatttccccaa |
125 |
Q |
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| T |
26641427 |
tacaaactacatgagccgataaacagccaatcttcaaataaagcatatgacagatacaccacgctcacttgaaacagaacaacaacggaaattgccccaa |
26641328 |
T |
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| Q |
126 |
agccaaaaacaaagcctaataacactaagccacaaaaaggcatcaaaagctaaatactaacagaacaaagctctgcagaagtcacaaaaccgtagcaaaa |
225 |
Q |
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| T |
26641327 |
agccaaaaacaaagcctaataatactaagccacagaaaagcatcagaagctaaatactaacggaacaaagctcagcagaagtcacaaaactgtagaacca |
26641228 |
T |
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| Q |
226 |
aatatagcagccataaaatgaattgcagcaagaacaaaaagccactgtgcagtacaaaatctgctga-ccaaaaaccaccgttcatagccaaacctgcca |
324 |
Q |
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| T |
26641227 |
aatatagcagccttagaatgcattgcagcaagtacaaaaagccactatgcggtacaaaatctgcagatcgaaaaaccaccacttaaagccaaacctgcca |
26641128 |
T |
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| Q |
325 |
acacaccacaccaccgctcaaaaacaaaattggcacaaccgtccaaaaggatttggagtgaccaggaaaataaaccaaggcagcaaaacgcaaaaagaaa |
424 |
Q |
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| T |
26641127 |
acgcaccacaccaccgctcaaaatcaaaactggcacaacagtccaaacggatttggagtgaccaggacaataaaccaaggcag---aacacaaaaa-taa |
26641032 |
T |
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| Q |
425 |
tacagcagaacaccactgactcgaataacacaaactgttgcagca |
469 |
Q |
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| T |
26641031 |
tgcaacagaacaccactgactcaaataatacaaactgatgcagca |
26640987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 393 - 467
Target Start/End: Complemental strand, 28101377 - 28101304
Alignment:
| Q |
393 |
aataaaccaaggcagcaaaacgcaaaaagaaatacagcagaacaccactgactcgaataacacaaactgttgcag |
467 |
Q |
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| T |
28101377 |
aataaaccaaggcattagaatgcaaaaacaa-tgcagcagaacaccacagactcgaataatacaaacagttgcag |
28101304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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