View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5065_low_10 (Length: 274)
Name: NF5065_low_10
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 33673192 - 33673432
Alignment:
| Q |
19 |
cacagatgaagctcatgtatgtctctttgattcttgtccattccattctcgtacatcatgcttttgtggatatatattttctctgttcgttttgctggca |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33673192 |
cacaaatgaagctcatgtatgtctctttgattcttgtccattccattctcgtacatcatgcttttgtggatatatattt-ctctgttcgttttgctggca |
33673290 |
T |
|
| Q |
119 |
tcgaaatccaggatcnnnnnnntgtcaatttcatggtacaatttatttgaatattaagttcgtcccaaacccatttgcctttggaataatcacaagcttc |
218 |
Q |
| |
|
|| |||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33673291 |
tcaaaatccaggatcaaaaaaatgtcagtttcatggcacaatttatttgaatattaagttcgtcccaaacccatttgcctttggaataatcacaagattc |
33673390 |
T |
|
| Q |
219 |
aattggttgaaatttttatgaattgttgggaggaatatgtga |
260 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
33673391 |
aattggttgaaatttttgtgaattgtttggaggaatatgtga |
33673432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 260
Target Start/End: Complemental strand, 20303242 - 20303041
Alignment:
| Q |
60 |
tccattctcgtacatcatgcttttgtggatatatattttctctgttcgttttgctggcatcgaaatccaggat-cnnnnnnntgtcaa-tttcatggtac |
157 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||| || || || |||||||||||||| |||||||||| | ||| |||||||| | |
|
|
| T |
20303242 |
tccattcttgtacatcatacttttgtggatatctattgtc-ctatttgttttgctggcatcagaatccaggataataataaaggacaattttcatgggaa |
20303144 |
T |
|
| Q |
158 |
aatttatttgaatattaag-ttcgtcccaaacccatttgcctttggaataatcacaagcttcaattggttgaaatttttatgaattgttgggaggaatat |
256 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| || ||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
20303143 |
aatttatttgaatattaagtttcgtccc-aacccatttgcctttggagtaatcacaagttttaattggttgaaatttttgtgatttgttgggagaaatac |
20303045 |
T |
|
| Q |
257 |
gtga |
260 |
Q |
| |
|
|||| |
|
|
| T |
20303044 |
gtga |
20303041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 25704886 - 25704807
Alignment:
| Q |
147 |
tttcatggtacaatttatttgaatattaagtt-cgtcccaaacccatttgcctttggaataatcacaagcttcaattggt |
225 |
Q |
| |
|
|||||| |||||| |||| |||||| |||||| ||||||||||||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
25704886 |
tttcatcgtacaacttatgtgaataataagtttcgtcccaaacccattgacctttggaaaaatcacatgcttcaattggt |
25704807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 225
Target Start/End: Complemental strand, 9711477 - 9711398
Alignment:
| Q |
147 |
tttcatggtacaatttatttgaatattaagtt-cgtcccaaacccatttgcctttggaataatcacaagcttcaattggt |
225 |
Q |
| |
|
|||||| |||||| |||| |||||| |||||| ||||||||||||||| ||||||||| ||||||| |||||||||||| |
|
|
| T |
9711477 |
tttcatcgtacaacttatctgaataataagtttcgtcccaaacccattgacctttggaaaaatcacatgcttcaattggt |
9711398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University