View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5065_low_12 (Length: 251)

Name: NF5065_low_12
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5065_low_12
NF5065_low_12
[»] chr2 (4 HSPs)
chr2 (9-251)||(36711133-36711373)
chr2 (150-200)||(99390-99440)
chr2 (149-201)||(4516477-4516529)
chr2 (156-204)||(35010501-35010549)
[»] chr6 (1 HSPs)
chr6 (149-203)||(12889381-12889435)
[»] chr1 (5 HSPs)
chr1 (149-203)||(6983935-6983989)
chr1 (157-203)||(17470480-17470526)
chr1 (150-203)||(2436020-2436073)
chr1 (149-202)||(52910196-52910249)
chr1 (150-202)||(19701549-19701601)
[»] scaffold0057 (1 HSPs)
scaffold0057 (150-203)||(47010-47063)
[»] chr3 (3 HSPs)
chr3 (151-200)||(25944449-25944498)
chr3 (150-203)||(34420771-34420824)
chr3 (150-202)||(45620956-45621008)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 36711373 - 36711133
Alignment:
Q  9 gagatgaagcgagggccttggcctacatagtaggcaacgtggggtcgtcatttgattcaccgtttttggtgtattgtatgcacttttatcatgnnnnnnn 108  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||           
T  36711373 gagatgaagagagggccttggcctacatagtaggcaacgtgtggtcgtcatttgattcaccgtttttggtgtattgtacgcacttttatcatgttttttt 36711274  T
Q  109 nnacacaagatgatattttcaagacttaaacttatggatttgtgacatttcagttacgtgacaacaactttactattgtaccaaggctcccccttcgtca 208  Q
      |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||| |||||||||||    
T  36711273 t-acacaagatgatgttttcaagacttaaacttatggatttgtgacatttcagttacgtgacaacaactttactgttgtgtcaaggct-ccccttcgtca 36711176  T
Q  209 atgaaggtataaaattacaacaacacttttggccgagtctttt 251  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  36711175 atgaaggtataaaattacaacaacacttttggccgagtctttt 36711133  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 200
Target Start/End: Original strand, 99390 - 99440
Alignment:
Q  150 gtgacatttcagttacgtgacaacaactttactattgtaccaaggctcccc 200  Q
    ||||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  99390 gtgacctttcagtcacgtgacaacaactttactgttgcgccaaggctcccc 99440  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 4516477 - 4516529
Alignment:
Q  149 tgtgacatttcagttacgtgacaacaactttactattgtaccaaggctccccc 201  Q
    |||||| ||||||| ||||||||||||||||||  |||  |||||||||||||    
T  4516477 tgtgacctttcagtcacgtgacaacaactttaccgttgcgccaaggctccccc 4516529  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 35010549 - 35010501
Alignment:
Q  156 tttcagttacgtgacaacaactttactattgtaccaaggctcccccttc 204  Q
    ||||||| || |||||||||||||||  ||| |||||||||||||||||    
T  35010549 tttcagtcacatgacaacaactttaccgttgcaccaaggctcccccttc 35010501  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 12889435 - 12889381
Alignment:
Q  149 tgtgacatttcagttacgtgacaacaactttactattgtaccaaggctccccctt 203  Q
    |||||| ||||| | ||||||||||||||||||  |||| |||||||||||||||    
T  12889435 tgtgacctttcactcacgtgacaacaactttaccgttgtgccaaggctccccctt 12889381  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 6983935 - 6983989
Alignment:
Q  149 tgtgacatttcagttacgtgacaacaactttactattgtaccaaggctccccctt 203  Q
    |||||| ||||||| |||||||||||||||||| ||||  ||||||||| |||||    
T  6983935 tgtgacctttcagtcacgtgacaacaactttaccattgcgccaaggctctccctt 6983989  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 203
Target Start/End: Original strand, 17470480 - 17470526
Alignment:
Q  157 ttcagttacgtgacaacaactttactattgtaccaaggctccccctt 203  Q
    |||||| ||||||||||||||||||  ||| ||||||||||||||||    
T  17470480 ttcagtcacgtgacaacaactttaccgttgcaccaaggctccccctt 17470526  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 2436020 - 2436073
Alignment:
Q  150 gtgacatttcagttacgtgacaacaactttactattgtaccaaggctccccctt 203  Q
    ||||| ||||||| ||||||||||||||||||  ||| |||||||| |||||||    
T  2436020 gtgacctttcagtcacgtgacaacaactttaccgttgcaccaaggccccccctt 2436073  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 52910249 - 52910196
Alignment:
Q  149 tgtgacatttcagttacgtgacaacaactttactattgtaccaaggctccccct 202  Q
    |||||| ||||||| || |||||||||||||||  ||| |||||||||||||||    
T  52910249 tgtgacctttcagtcacatgacaacaactttaccgttgcaccaaggctccccct 52910196  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 19701601 - 19701549
Alignment:
Q  150 gtgacatttcagttacgtgacaacaactttactattgtaccaaggctccccct 202  Q
    ||||||||||||| ||  ||||||||||||||| |||  ||||||||||||||    
T  19701601 gtgacatttcagtcacacgacaacaactttactgttgcgccaaggctccccct 19701549  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 47010 - 47063
Alignment:
Q  150 gtgacatttcagttacgtgacaacaactttactattgtaccaaggctccccctt 203  Q
    ||||| ||||||| || ||||||||||||||||||||  ||||||||| |||||    
T  47010 gtgacctttcagtcacctgacaacaactttactattgcgccaaggctctccctt 47063  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 25944498 - 25944449
Alignment:
Q  151 tgacatttcagttacgtgacaacaactttactattgtaccaaggctcccc 200  Q
    |||| ||||||| ||||||||||||||||||| |||  ||||||||||||    
T  25944498 tgacctttcagtcacgtgacaacaactttactgttgcgccaaggctcccc 25944449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 34420771 - 34420824
Alignment:
Q  150 gtgacatttcagttacgtgacaacaactttactattgtaccaaggctccccctt 203  Q
    ||||| ||||||| ||||||||||||||||||| |||  ||||||| |||||||    
T  34420771 gtgacctttcagtcacgtgacaacaactttactgttgcgccaaggccccccctt 34420824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 45620956 - 45621008
Alignment:
Q  150 gtgacatttcagttacgtgacaacaactttactattgtaccaaggctccccct 202  Q
    ||||| ||||||| ||||||||||||||||||  |||  ||||||||||||||    
T  45620956 gtgacctttcagtcacgtgacaacaactttaccgttgcgccaaggctccccct 45621008  T

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