View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5065_low_13 (Length: 246)

Name: NF5065_low_13
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5065_low_13
NF5065_low_13
[»] chr6 (1 HSPs)
chr6 (19-237)||(25521028-25521246)
[»] chr5 (9 HSPs)
chr5 (19-238)||(42125378-42125597)
chr5 (19-238)||(42130603-42130822)
chr5 (23-238)||(41711796-41712011)
chr5 (19-237)||(34230808-34231038)
chr5 (32-227)||(42118787-42118983)
chr5 (19-237)||(34238863-34239081)
chr5 (19-169)||(41570022-41570172)
chr5 (23-91)||(41433422-41433490)
chr5 (25-91)||(41446146-41446212)
[»] chr3 (1 HSPs)
chr3 (19-238)||(8524833-8525052)
[»] chr4 (1 HSPs)
chr4 (19-238)||(11120152-11120371)
[»] chr2 (1 HSPs)
chr2 (18-238)||(12250199-12250419)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 25521028 - 25521246
Alignment:
Q  19 tgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaatgatttcactggctctcat 118  Q
    ||||||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  25521028 tgaaggcctccaaggtatattccatcctaatagtactcttttccatcttgctcatattcaaaaactcaacctttcttacaatgatttcactggctcccat 25521127  T
Q  119 tttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagttcctttaaaggtaaaattccaactcaaatctcacatctttcta 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |    
T  25521128 tttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagtttctttaaaggtaaaattccaactcaaatctcacacctttcca 25521227  T
Q  219 aattacaatcacttcatct 237  Q
    |||||||||||||||||||    
T  25521228 aattacaatcacttcatct 25521246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 42125597 - 42125378
Alignment:
Q  19 tgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaatgatttcactggctctcat 118  Q
    ||||||||||||||||| | | |||||||| ||||| |||||  |||||| |||| || ||| ||||||||||||| ||||||||||| ||  |||||||    
T  42125597 tgaaggccttcaaggtaaactacatcctaacagtacccttttcaatcttgttcatcttcaaacactcaacctttctaacaatgatttctcttactctcat 42125498  T
Q  119 tttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagttcctttaaaggtaaaattccaactcaaatctcacatctttcta 218  Q
    |||||| |||||||||||||||||  ||||||| |||||||| |||||||| |||||| |||||||||| ||||||||| |||||||||||| ||||| |    
T  42125497 tttcattctaagtttggtgggtttatgagtcttgcacatcttgacttgtctcgtagtttctttaaaggtgaaattccaattcaaatctcacacctttcca 42125398  T
Q  219 aattacaatcacttcatctc 238  Q
    ||||||||||||||||||||    
T  42125397 aattacaatcacttcatctc 42125378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 42130822 - 42130603
Alignment:
Q  19 tgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaatgatttcactggctctcat 118  Q
    ||||||||||  ||||| |||  ||||||||||||| ||||||||||||| |||| |  ||| |||||||||||||||||||||||||  || |||||||    
T  42130822 tgaaggccttacaggtacattcaatcctaatagtaccctttttcatcttgttcatctccaaacactcaacctttcttacaatgatttctttgactctcat 42130723  T
Q  119 tttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagttcctttaaaggtaaaattccaactcaaatctcacatctttcta 218  Q
    ||||||  ||||||| |||| ||||||||||||||||||||| ||||||||| ||||  |||  ||||| ||||||||||||||||||| || || || |    
T  42130722 tttcattataagttttgtggatttcagagtcttacacatcttgacttgtctgatagtaacttagaaggtgaaattccaactcaaatctctcacctatcca 42130623  T
Q  219 aattacaatcacttcatctc 238  Q
    ||||||||||||||||||||    
T  42130622 aattacaatcacttcatctc 42130603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 41711796 - 41712011
Alignment:
Q  23 ggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaatgatttcactggctctcattttc 122  Q
    ||||||||||||||||| |||||||||| ||| ||||| ||||||| |||| |  ||| ||||||||||||||||||||||||| ||  ||| |||||||    
T  41711796 ggccttcaaggtatattccatcctaataatactcttttccatcttgttcatctccaaacactcaacctttcttacaatgatttctcttactcccattttc 41711895  T
Q  123 atgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagttcctttaaaggtaaaattccaactcaaatctcacatctttctaaatt 222  Q
    || ||||||||||| |||||  ||||||| |||||||| || |||||  ||||| |||| ||||| ||||||||| |||||||||||| || || |||||    
T  41711896 attctaagtttggtcggtttttgagtcttgcacatcttgacatgtcttatagttactttgaaggtgaaattccaattcaaatctcacacctctccaaatt 41711995  T
Q  223 acaatcacttcatctc 238  Q
    ||||||||||||||||    
T  41711996 acaatcacttcatctc 41712011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 34230808 - 34231038
Alignment:
Q  19 tgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaat------------gatttc 106  Q
    ||||||| ||||||||||| | |||||||||||||| ||||| |||||||||||  || |||  |||||||||||  |||||            ||||||    
T  34230808 tgaaggctttcaaggtatactccatcctaatagtacccttttccatcttgctcaccttcaaatgctcaacctttcgaacaattatttctctaacgatttc 34230907  T
Q  107 actggctctcattttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagttcctttaaaggtaaaattccaactcaaatct 206  Q
     ||||||| ||||||||| |||||||||| ||||||  |||||||||||||||  ||||||||  | ||| |||| ||| | |||||||  |||||||||    
T  34230908 tctggctcccattttcattctaagtttggcgggtttatgagtcttacacatctcgacttgtcttcttgtttctttcaagatgaaattccttctcaaatct 34231007  T
Q  207 cacatctttctaaattacaatcacttcatct 237  Q
    |  | ||||| ||||||||||||||||||||    
T  34231008 cggacctttccaaattacaatcacttcatct 34231038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 227
Target Start/End: Complemental strand, 42118983 - 42118787
Alignment:
Q  32 ggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaatgatttcactggctctcattttcatgctaagt 131  Q
    |||| ||| |||||||| | ||| ||||| ||||||| |||| |  ||| ||| |||||| | | |||| ||||| | |  |||| ||||||| ||||||    
T  42118983 ggtaaattacatcctaacaatacccttttccatcttgttcatctccaaacactaaaccttgcatccaataatttctccgcttctcgttttcattctaagt 42118884  T
Q  132 ttggtgggtttcagagtcttacacatctttacttgtctggtag-ttcctttaaaggtaaaattccaactcaaatctcacatctttctaaattacaat 227  Q
    ||||||| |||  |||||||||||||||| ||||||||  ||| || |||||||||| ||||||||||||||||||||||  | || ||||||||||    
T  42118883 ttggtggttttttgagtcttacacatcttgacttgtctcatagttttctttaaaggtgaaattccaactcaaatctcacacttatccaaattacaat 42118787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 34238863 - 34239081
Alignment:
Q  19 tgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaatgatttcactggctctcat 118  Q
    ||||||| ||||||||||| | |||||||||||||| |||||  || ||| |||| |  ||| ||||||||||||| |||||| ||||  ||| ||  ||    
T  34238863 tgaaggctttcaaggtatactccatcctaatagtacccttttcaatattgttcatctccaaacactcaacctttctaacaatggtttctatggttcctat 34238962  T
Q  119 tttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagttcctttaaaggtaaaattccaactcaaatctcacatctttcta 218  Q
    ||| || ||||||||||  |||||  |||||||||||||||| ||||||||  || |    ||   ||| |||||||  ||||||||||| | ||||| |    
T  34238963 tttgattctaagtttggcaggtttacgagtcttacacatcttgacttgtctaatactcatgttggcggtgaaattccttctcaaatctcatacctttcca 34239062  T
Q  219 aattacaatcacttcatct 237  Q
    |||||||||||||||||||    
T  34239063 aattacaatcacttcatct 34239081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 169
Target Start/End: Original strand, 41570022 - 41570172
Alignment:
Q  19 tgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaatgatttcactggctctcat 118  Q
    |||| |||||||||||| | || ||||||| |  || |||||||||||||||||| |  ||  ||||||||||||| |||||||||||     |||  ||    
T  41570022 tgaatgccttcaaggtaaaatttatcctaacaacactctttttcatcttgctcatctccaatcactcaacctttctcacaatgatttcttcaactccaat 41570121  T
Q  119 tttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtct 169  Q
    || ||| || |||||||||| ||| ||||||||||||||||| ||||||||    
T  41570122 ttgcattctcagtttggtggatttaagagtcttacacatcttgacttgtct 41570172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 41433490 - 41433422
Alignment:
Q  23 ggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctt 91  Q
    ||||||||||||||  ||||||| || |||||||||||||||||| ||||| |  ||| ||||||||||    
T  41433490 ggccttcaaggtatgattcatcccaacagtacactttttcatctttctcatctccaaacactcaacctt 41433422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 41446212 - 41446146
Alignment:
Q  25 ccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctt 91  Q
    ||||||||||||  ||||||| || |||||||||||||||||| ||||| |  ||| ||||||||||    
T  41446212 ccttcaaggtattattcatcccaacagtacactttttcatctttctcatctccaaacactcaacctt 41446146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 8525052 - 8524833
Alignment:
Q  19 tgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaatgatttcactggctctcat 118  Q
    |||||| |||||||| ||| |  ||||||| ||||| ||||| ||||||||| ||||| |||||||||||||| || ||||||||||| |||||||| ||    
T  8525052 tgaaggtcttcaaggcatactcaatcctaacagtacccttttccatcttgcttatattcaaaaactcaaccttgctaacaatgatttctctggctcttat 8524953  T
Q  119 tttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagttcctttaaaggtaaaattccaactcaaatctcacatctttcta 218  Q
    |||||| | |||||||||||||||  |||||| ||||||||| ||||||||  ||||| | |||||||| |||||||||||||||||||||| ||||  |    
T  8524952 tttcattcaaagtttggtgggtttttgagtctcacacatcttgacttgtctcatagttaccttaaaggtgaaattccaactcaaatctcacacctttgca 8524853  T
Q  219 aattacaatcacttcatctc 238  Q
    ||||||||||||||||||||    
T  8524852 aattacaatcacttcatctc 8524833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 11120371 - 11120152
Alignment:
Q  19 tgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaatgatttcactggctctcat 118  Q
    |||||| |||||||| ||||| ||||| |||||||| ||||| ||||||| |||| |  ||| ||||||||||   |||||| ||||| | ||||||| |    
T  11120371 tgaaggtcttcaaggcatattacatccgaatagtacccttttccatcttgttcatctccaaacactcaaccttgtatacaataatttctccggctctcgt 11120272  T
Q  119 tttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagttcctttaaaggtaaaattccaactcaaatctcacatctttcta 218  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||  | || | ||| |||||||||||||||||||| ||||||| |    
T  11120271 tttcattctaagtttggtgggtttcagagtcttacacatctttacttgtcttatagtaacatttatggtgaaattccaactcaaatctcatatctttcca 11120172  T
Q  219 aattacaatcacttcatctc 238  Q
    |||||||||| ||| |||||    
T  11120171 aattacaatccctttatctc 11120152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 12250419 - 12250199
Alignment:
Q  18 atgaaggccttcaaggtatatttcatcctaatagtacactttttcatcttgctcatattaaaaaactcaacctttcttacaatgatttcactggctctca 117  Q
    ||||||||||| | |||||||| || ||||||||||| |||||  ||||||||||| |  ||| |||||||||||||| |||||||||| |   ||| ||    
T  12250419 atgaaggccttgatggtatattacaacctaatagtacccttttcgatcttgctcatctccaaacactcaacctttcttccaatgatttctcaaactccca 12250320  T
Q  118 ttttcatgctaagtttggtgggtttcagagtcttacacatctttacttgtctggtagttcctttaaaggtaaaattccaactcaaatctcacatctttct 217  Q
    ||||||| ||||||||||||| ||    | ||||||||||||| ||||||||  ||||| |||||||||| || ||||||||||||||||||| |||||     
T  12250319 ttttcattctaagtttggtggattctttaatcttacacatcttgacttgtctaatagtttctttaaaggtgaagttccaactcaaatctcacacctttcc 12250220  T
Q  218 aaattacaatcacttcatctc 238  Q
    |||||| ||||||||||||||    
T  12250219 aaattagaatcacttcatctc 12250199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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