View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065_low_17 (Length: 227)
Name: NF5065_low_17
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065_low_17 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 18427144 - 18427360
Alignment:
| Q |
1 |
ttttggagattgaatttgattatcaaccactttggcttcatttgataaaatccatgctttgattagcctttgaagtgtgtgatttggagtcaaatattct |
100 |
Q |
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| T |
18427144 |
ttttggagattgaatttgattatcaaccactttggcttcatttgataaaatccatgctttgattagcctttgaagtgtgtgatttggagtcaaatattct |
18427243 |
T |
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| Q |
101 |
gaacttcttggtagtgattgatttgttaccggacatacacaaattttggctttcattaaccatttttcaatgctttttctatcgtatgttattcctgtca |
200 |
Q |
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| T |
18427244 |
gaacttcttggtagtgattgatttgttaccggacatacacaaattttggctttcattaaccatttttcaatgctttttctatcgtatgttattcctgtca |
18427343 |
T |
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| Q |
201 |
ctgttgtcacaggttct |
217 |
Q |
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| T |
18427344 |
ctgttgtcacaggttct |
18427360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 13625930 - 13625834
Alignment:
| Q |
116 |
gattgatttgttaccggacatacacaaattttggctttcattaaccatttttcaatgctttttctatcgtatgttattcctgtcactgttgtcacag |
212 |
Q |
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| T |
13625930 |
gattgttttgttgccggacacaaacaaattttggctttcatttaccacttttcgatgctttttctgtcgtatgttatgtttgtcgctgttgtcacag |
13625834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 13625995 - 13625942
Alignment:
| Q |
1 |
ttttggagattgaatttgattatcaaccactttggcttcatttgataaaatcca |
54 |
Q |
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| T |
13625995 |
ttttggagattgaatttgatgatcaaccactttggcttcattttatgaaatcca |
13625942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 13526723 - 13526658
Alignment:
| Q |
115 |
tgattgatttgttaccggacatacacaaattttggctttcattaaccatttttcaatgctttttct |
180 |
Q |
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| T |
13526723 |
tgattgttttgttaccggacacaaacaaattttggcttttgttaaccacttttcgatgctttttct |
13526658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 13526765 - 13526720
Alignment:
| Q |
1 |
ttttggagattgaatttgattatcaaccactttggcttcatttgat |
46 |
Q |
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| T |
13526765 |
ttttggagactgaatttgatgatcaaccactttggcttcatttgat |
13526720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 124120 - 124075
Alignment:
| Q |
1 |
ttttggagattgaatttgattatcaaccactttggcttcatttgat |
46 |
Q |
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| T |
124120 |
ttttggagattgaatttgatgatcaaccactttggcttcatttgat |
124075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 180
Target Start/End: Complemental strand, 124078 - 124013
Alignment:
| Q |
115 |
tgattgatttgttaccggacatacacaaattttggctttcattaaccatttttcaatgctttttct |
180 |
Q |
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|||||| |||||||||||||| | ||||||||||||||| ||||||| |||| ||||||||||| |
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| T |
124078 |
tgattgttttgttaccggacacaaacaaattttggcttttgttaaccacttttagatgctttttct |
124013 |
T |
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