View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065_low_2 (Length: 383)
Name: NF5065_low_2
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 15815524 - 15815157
Alignment:
| Q |
1 |
tttctgtcagttttgtatccacgctgctgttagagatatcgctcaactttgtcccaatggcgtctcggctatgatatggtatgacatatgcgtcatcggt |
100 |
Q |
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| T |
15815524 |
tttctgtcaattttgtatcaacgctgctgttagagcgatcgctcaatgttgtcccaatggcgtctcggctatgatatggtatgacatatgtgtcatcggt |
15815425 |
T |
|
| Q |
101 |
tattctgaccacaatacaaccggaaaaatttctgttaccccatcatggaatttaaccggaaccaaaaatacgaaggactcaactgaacttgagaaagcag |
200 |
Q |
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| T |
15815424 |
tattctgaccataatacatcaggaaaaatttctgttaccccatcatggaatttaaccggaaccaaaaacacgaaggactcaactgaacttgagaaagcag |
15815325 |
T |
|
| Q |
201 |
tagatgacatgaggaatttgataggaagagtgacggcagaagctaattccaattgggcagtgggagagttcgattggagtgacaccgagaaaaggtatgg |
300 |
Q |
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| T |
15815324 |
tagatgacatgaggaatttgataggaagagtgacggcagaagctaattccaattgggcagtgggagagttcgattggagtgacaccgagaaaaggtatgg |
15815225 |
T |
|
| Q |
301 |
ttgggtgcagtgtaatagtgaccttacaaaagacgggtgcagatattgtttggaaactatgttggata |
368 |
Q |
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| T |
15815224 |
ttgggtgcagtgtaatagtgaccttacaaaagacgggtgcagatattgtttggaaactatgttggata |
15815157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 15802031 - 15801719
Alignment:
| Q |
14 |
tgtatccacgctgctgttagagatatcgctcaactttgtcccaatggcgtctcggctatgatatggtatgacatatgcgtcatcggttattctgaccaca |
113 |
Q |
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| T |
15802031 |
tgtatcaacactgctgttagagaaatcgctcaacgttgtcctaacagtgtttcggctttgatatggtatgatgtatgcgtcatgggttacacaaaccaga |
15801932 |
T |
|
| Q |
114 |
atacaaccggaaaaatttctgttaccccatcatggaatttaaccggaaccaaaaatacgaaggactcaactgaacttgagaaagcagtagatgacatgag |
213 |
Q |
| |
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|||| || |||||| || ||| || |||||||||||| |||||||| ||| ||| ||||||||||| ||||||| |||||| | || |||||| |
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| T |
15801931 |
atacgacaggaaaagttattgtaacaccatcatggaatataaccggatccagaaacgttaaggactcaacagaacttgggaaagctgagaataacatgat |
15801832 |
T |
|
| Q |
214 |
gaatttgataggaagagtgacggcagaagctaattccaattgggcagtgggagagttcgattggagtgacaccgagaaaaggtatggttgggtgcagtgt |
313 |
Q |
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|| ||||||| | | |||||| ||||| | | | || ||||||| ||| |||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
15801831 |
gagtttgatacgcaaagtgactacagaatccagtcccgtttgggcaacgggtgagttcatttggagtgacaccgagaaaaggtatggtttggtgcagtgt |
15801732 |
T |
|
| Q |
314 |
aatagtgacctta |
326 |
Q |
| |
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||||| ||||||| |
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| T |
15801731 |
aatagagacctta |
15801719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 15794245 - 15793878
Alignment:
| Q |
1 |
tttctgtcagttttgtatccacgctgctgttagagatatcgctcaactttgtcccaatggcgtctcggctatgatatggtatgacatatgcgtcatcggt |
100 |
Q |
| |
|
||||||||| ||||||||| || ||| |||||||||||| || || ||||||||| | ||||| ||||||||||||||||| ||||| |||| ||| |
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|
| T |
15794245 |
tttctgtcaattttgtatcaacactgttgttagagatattgcaaaatattgtcccaacagtgtctcagctatgatatggtatgatttatgcatcatgggt |
15794146 |
T |
|
| Q |
101 |
tattctgaccacaatacaaccggaaaaatttctgttaccccatcatggaatttaaccggaaccaaaaatacgaaggactcaactgaacttgagaaagcag |
200 |
Q |
| |
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|| || |||| ||| | | |||| | || ||| || |||||||||||| |||||||| | |||| || ||||| || ||||||| |||| | | |
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|
| T |
15794145 |
tacactaaccagaatccctcgggaagagttattgtaactccatcatggaatgtaaccggatctaaaatcgttaaagactcgacagaacttgcgaaatctg |
15794046 |
T |
|
| Q |
201 |
tagatgacatgaggaatttgataggaagagtgacggcagaagctaattccaattgggcagtgggagagttcgattggagtgacaccgagaaaaggtatgg |
300 |
Q |
| |
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|| |||||| || ||||||| ||| ||||||| |||||| ||| ||||||||||| |||| |||||| ||||||||||||| |||||||||||||| |
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| T |
15794045 |
agaataacatgatgagtttgatacgaaaagtgacgacagaaggcaatcccaattgggcaatgggtgagttcaattggagtgacactgagaaaaggtatgg |
15793946 |
T |
|
| Q |
301 |
ttgggtgcagtgtaatagtgaccttacaaaagacgggtgcagatattgtttggaaactatgttggata |
368 |
Q |
| |
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| ||||||||||||||| ||||||| || || ||||| ||| | |||||||| |||||||||||| |
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| T |
15793945 |
tatggtgcagtgtaatagagaccttagtaaggatgggtgtagacagtgtttggaggctatgttggata |
15793878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 15807663 - 15807347
Alignment:
| Q |
1 |
tttctgtcagttttgtatccacgctgctgttagagatatcgctcaactttgtcccaatggcgtctcggctatgatatggtatgacatatgcgtcatcggt |
100 |
Q |
| |
|
||||||||| ||||| ||| || ||||| ||||||| || || || ||||||||| | ||||||||||| ||||||||||| ||||| |||| ||| |
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|
| T |
15807663 |
tttctgtcaattttgcatcaacactgcttttagagaaattgcaaaatattgtcccaacagtgtctcggctattatatggtatgatgtatgcatcatgggt |
15807564 |
T |
|
| Q |
101 |
tattctgaccacaatacaaccggaaaaatttctgttaccccatcatggaatttaaccggaaccaaaaatacgaaggactcaactgaacttgagaaagcag |
200 |
Q |
| |
|
||| || |||| ||| | | |||| | ||| | | |||||||||||| |||||||| ||||||| ||||||||||| ||||||| |||||| | |
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|
| T |
15807563 |
tatactaaccagaatccctcaggaagagtttttctagaaccatcatggaatgtaaccggatccaaaaacgttaaggactcaacagaacttgggaaagctg |
15807464 |
T |
|
| Q |
201 |
tagatgacatgaggaatttgataggaagagtgacggcagaagctaattccaattgggcagtgggagagttcgattggagtgacaccgagaaaaggtatgg |
300 |
Q |
| |
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|| ||||| || ||||||| | | |||||| ||| ||| | | |||||||||| | |||||| ||||||||||||| || ||||||||||| |
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| T |
15807463 |
agaatagcatgacgagtttgatacgcaaagtgactacagtagcgagtctcaattgggcaactgatgagttcaattggagtgacactgacaaaaggtatgg |
15807364 |
T |
|
| Q |
301 |
ttgggtgcagtgtaata |
317 |
Q |
| |
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| |||||||||||||| |
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|
| T |
15807363 |
cttggtgcagtgtaata |
15807347 |
T |
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