View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065_low_3 (Length: 377)
Name: NF5065_low_3
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 66 - 366
Target Start/End: Complemental strand, 45097349 - 45097054
Alignment:
| Q |
66 |
tttgtaatattaaaagctttcaatgttaaaatcgagcctcctaatggtgccttttgaggagtttaggcccctcgcagtttgtggtggcattttctgaaat |
165 |
Q |
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| T |
45097349 |
tttgtaatattaaaagctttcaatgttaaaatcgagcctcctaatggtgcctcttgaggagtttaggcccctcgcagtttgtggtggcattttctgaaat |
45097250 |
T |
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| Q |
166 |
tgcaattcttagtttttaggtccttttaatttgcctgcaatttagggatctcaaatgttcttaatactgaactcattggtgctacaaatgcagcataaag |
265 |
Q |
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| T |
45097249 |
tgcaattcttagtttttaggtcctttt-----gcctgcaatttagggatctcaaatgttcttaatactgaactcattggtgctacgaatgcagcatagag |
45097155 |
T |
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| Q |
266 |
tgctcatgagaaatatgcttgttttcttggctttcaagtcttctaaggttgtcccttggccgttgattgaagaacagatgagagaattgtctctatttca |
365 |
Q |
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| T |
45097154 |
tgctcatgagaaatatgcttgttttcttggctttcaagtcttctaaggttgtcccgtggccgttgattgaagaacagatgagagaattgtctctatttca |
45097055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 45097419 - 45097370
Alignment:
| Q |
17 |
tcaatttctgactacaataacaaattagtttgaccatgataataacttgtttg |
69 |
Q |
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| T |
45097419 |
tcaatttctgactacaataacaaa---gtttgaccatgataataacttgtttg |
45097370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 325
Target Start/End: Complemental strand, 11775932 - 11775891
Alignment:
| Q |
284 |
ttgttttcttggctttcaagtcttctaaggttgtcccttggc |
325 |
Q |
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| T |
11775932 |
ttgttttcttagctttcaagtcttctaaggttgtcccttggc |
11775891 |
T |
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