View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065_low_4 (Length: 363)
Name: NF5065_low_4
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 92 - 354
Target Start/End: Original strand, 41796850 - 41797112
Alignment:
| Q |
92 |
atagcatgcctcgtctcgattcaataatcacttatgtaccaactacatgaatgaatggatttccaacacttaccaatgtaccgaccgcgtgaatgcgggg |
191 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41796850 |
atagcatgcctcatctcgattcaataaccacttatgtaccaactacatgaatgaatggatttccaacacttaccaatgtaccgaccgcgtgaatacgggg |
41796949 |
T |
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| Q |
192 |
attacctatcacaacctatcccaattctaaactctaaacttaaaggtatctttcatctagaagaaaccaccgtccttgtgtccttgaaagtactgattca |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41796950 |
attacctatcacaacctatcccaattctaaactctaaacttaaaggtatctttcatctagaagaaaccaccgtccttgtgtccttgaaagtactgattca |
41797049 |
T |
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| Q |
292 |
tgcatcatgcataactaaagcaataatacaaagaaaacaaacccgagaggaatgaagaataat |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41797050 |
tgcatcatgcataactaaagcaataatacaaagaaaacaaacccgagaggaatgaagaataat |
41797112 |
T |
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