View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065_low_6 (Length: 330)
Name: NF5065_low_6
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 211
Target Start/End: Original strand, 45678455 - 45678650
Alignment:
| Q |
19 |
tcttcccagtgaaactcgtatttttgaaatatatcatcatcacaattatatttggcatttgacaatatatactgtaaatgtttcaaatgatttagt---g |
115 |
Q |
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| T |
45678455 |
tcttcccagtgaaactcgtatttttgaaatatatcatcatcaccattatatttggcatttgacaatatatactgtaaatgtttcaaatgatttagtactg |
45678554 |
T |
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| Q |
116 |
ttatgctcaagcaagtattactcgtttagatttgtagccactgtgaccacttaatcaatcaattgcaacatactccaaggattagaacatacacgt |
211 |
Q |
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| T |
45678555 |
ttatgctcaagcaagtattactcgtttagatttgtagccactgtgaccacttaatcaatcaattgcaacatactccaaggatcagaacatacacgt |
45678650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 45678641 - 45678726
Alignment:
| Q |
232 |
acatccacgtcatatgtacgtatatatcctatttacgttgttgtacttgtcccattcagatgaacataactctttcgagtctgtct |
317 |
Q |
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| T |
45678641 |
acatacacgtcatatgtacgtatatatcctatttacgttgttgtacttgtcccattcagatgaacataactctttcgagtctgtct |
45678726 |
T |
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