View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5065_low_8 (Length: 301)
Name: NF5065_low_8
Description: NF5065
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5065_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 48054136 - 48053863
Alignment:
| Q |
9 |
gagatgaataaatgcattagacagatcaaactatgcatcagaaaccaccttgattgatactgcagttagatttctgtctgtgcttctgtttcttggggca |
108 |
Q |
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| T |
48054136 |
gagatgaataaatgcattagacagatcaaactatgcatcagaaaccaccttgattgatactgcagttagatttccgtctatgcttctgtttcttggggca |
48054037 |
T |
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| Q |
109 |
ggggtaatttctaggccttaactatcaagcctgtcaaatatttctgtattttcttgttattgtcatacttactgaaattggagcttcagtcaaagccagg |
208 |
Q |
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| T |
48054036 |
ggggtaatttctaggccttaactatcaagcctgtcaaatatttctgtattttcttgttattgtcatacttactgaaattggagcttcagtcaaagccaag |
48053937 |
T |
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| Q |
209 |
aagtttatgttttgaactcttcctttaaattttgataaaggaatgaaactctgatgttagttgcaataacctca |
282 |
Q |
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| T |
48053936 |
aagtttacgttttgaactcttcctttaaattttgataaaggaatgaaactctgatgttagttgcaataacctca |
48053863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 29814061 - 29814198
Alignment:
| Q |
77 |
gatttctgtctgtgcttctgtttcttggggcaggggtaatttctaggccttaactatcaagcctgtcaaatatttctgtattttcttgttattgtcatac |
176 |
Q |
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| T |
29814061 |
gatttctgtctatgctcccattttctggggcaggggtaatttctaggctttaaccatcgtgcttcacgaatttttctgcattttcttgttattgtcatat |
29814160 |
T |
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| Q |
177 |
ttactgaaattggagcttcagtcaaagccaggaagttt |
214 |
Q |
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| T |
29814161 |
ttattgaaatcagggcttctgtcaaagccaagaagttt |
29814198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 282
Target Start/End: Complemental strand, 48052727 - 48052601
Alignment:
| Q |
157 |
ttttcttgttattgtcatacttactgaaattggagcttcagtcaaagccaggaagtttatgttttgaactcttcctttaaattttgat-aaaggaatgaa |
255 |
Q |
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||||||||||||||||||| |||||||||||| | ||| ||||| |||| |||||| | |||| ||| |||| || ||||| || ||||||||||| |
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| T |
48052727 |
ttttcttgttattgtcatatctactgaaattggggattctgtcaaggccaagaagttgaattttttaacctttccctttaatttcaataaaaggaatgaa |
48052628 |
T |
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| Q |
256 |
actctgatgttagttgcaataacctca |
282 |
Q |
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|||| ||||| ||||||||||||| |
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| T |
48052627 |
actcaactgttaactgcaataacctca |
48052601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 29813958 - 29814007
Alignment:
| Q |
7 |
gtgagatgaataaatgcattagacagatcaaactatgcatcagaaaccac |
56 |
Q |
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| T |
29813958 |
gtgagataaataaatgcaataggaaaatcaaactatgcatcagaaaccac |
29814007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 48052797 - 48052744
Alignment:
| Q |
77 |
gatttctgtctgtgcttctgtttcttggggcaggggtaatttctaggccttaac |
130 |
Q |
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| T |
48052797 |
gatttctggctatgcttccatttcttggggcagggataatatctaggccttaac |
48052744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 1173329 - 1173288
Alignment:
| Q |
15 |
aataaatgcattagacagatcaaactatgcatcagaaaccac |
56 |
Q |
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| T |
1173329 |
aataaatgcattaggcaaatcaaactatacatcagaaaccac |
1173288 |
T |
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